| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1262 |
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| Symbol | |
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| ID | 3973019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1378868 |
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| End bp | 1379914 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637924372 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_531143 |
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| Protein GI | 90422773 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.238367 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0709995 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGC AATCCGATCT CGCCGCCTGC CGCGAAATGC TGAAGGAAGG CTCGCGCACC
TTCCACGCCG CCTCCCTGGT GCTGCCGCGG CGGATCAGCG ATCCGGCGGT CGCGCTGTAC
GCGTTCTGCC GCGTCGCCGA CGACGCGGTG GATCTCGGCG TCGATCGCGC CGCCGCCGTC
GAATTGCTGA AGGACCGGCT CGACCGCATC TGCCGCGGCC TGCCGATGCC GTACCCGTCC
GACCGGGCGT TTGCCGACGT GGTGGCGCGC TACGCCATTC CCGACGCCAT TCCGGCCGCG
CTGATCGAGG GCCTGGCCTG GGACGCCGAG GGCCGTCGCT ACGAGACGCT GTCCGATCTG
TATGGCTACG CCGCCCGCGT CGCCGGCACC GTCGGGGTGA TGATGACGCT GGTGATGGGC
CAGCGCTCGC CCGACATTGT CGCGCGCGCC TGCGATCTCG GCTGCGCCAT GCAGCTCACC
AACATCGCCC GCGACGTCGG CGAGGACGCC CGCGCCGGCC GGCTGTATCT GCCGCTGTCC
TGGATGCGCG AGGCCGGCCT CGATCCGGAG CAGTGGCTGC AAAACCCGGT GTTCAATTCG
CAGATCGCCT CCATCGTCAA GCGGCTGATC GACACCGCCG ACGCATTGTA CGACCGTGCC
ACCTTCGGCA TCGAGAATCT GCCGCGCGCC TGCCGCCCGG GGATCTTCGC CGCGCGCGCG
CTGTATGCCG AGATCGGCCG CGAGGTCGAA CGGTCGGGGC TGGATTCGGT GTCGAGCCGC
GCCGTGGTCT CGACCGGCCG CAAGCTTGCC GTGCTGGCCA GGATGCTGGC GTTCAGCGAG
ACCGAATGGG CCCCGGCCAA GGATCTGCCG GCGCGGTTCG GCGACATGGC CGAGACCCGC
TTCCTGATCG ACGCCATCAT CGCCACGCCG CTGCGCGACA CCCCGGTGGT GCCGCAGCAA
AAGCCGATCG AGAACAAGGT GGCCTGGCTG GTCGATCTGT TCTCCAGGCT GGAACGCCGC
GACCAGCTGG CGCGTAGCCG GGCGTAA
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| Protein sequence | MSTQSDLAAC REMLKEGSRT FHAASLVLPR RISDPAVALY AFCRVADDAV DLGVDRAAAV
ELLKDRLDRI CRGLPMPYPS DRAFADVVAR YAIPDAIPAA LIEGLAWDAE GRRYETLSDL
YGYAARVAGT VGVMMTLVMG QRSPDIVARA CDLGCAMQLT NIARDVGEDA RAGRLYLPLS
WMREAGLDPE QWLQNPVFNS QIASIVKRLI DTADALYDRA TFGIENLPRA CRPGIFAARA
LYAEIGREVE RSGLDSVSSR AVVSTGRKLA VLARMLAFSE TEWAPAKDLP ARFGDMAETR
FLIDAIIATP LRDTPVVPQQ KPIENKVAWL VDLFSRLERR DQLARSRA
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