| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1258 |
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| Symbol | hemE |
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| ID | 3972051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1374245 |
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| End bp | 1375222 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924368 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_531139 |
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| Protein GI | 90422769 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0175405 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGATGA TGCGTCAGGC CGGCCGTTAT CTACCGGAGT ACCGGGAGGT TCGCGCCAAG
GCAGGCGGCT TTCTCGACCT GTGCTTCAAC GCGGAATTCG CCGCCGAAGT GACGCTGCAG
CCGATCCGCC GCTTCGGCTT CGACGCCGCG ATCATCTTCT CCGACATTCT GGTGGTGCCC
TACGCGCTCG GCCGCGCGGT GCGGTTCGAG GTCGGCGAAG GCCCGCGGCT GGAGCCGCTG
GACTCGCCGG ACAAGGTCGG CACGCTGTCC AAGGCGATCG ACCTGTCGAA GCTGCAGCCG
GTGTTCGACG CGCTGAAGAT CGTGCGCCGC GAACTCCCCG CCGAGACGGC GCTGATCGGC
TTCTGCGGTT CGCCGTTCAC GGTGGCGACC TATATGGTCG CCGGCCACGG CACCCCGGAT
CAGGCCCCGG CGCGCAACAT GGCCTATCAG CACCCCGGCG CGTTCGCCAA AATCATCGAC
GTGCTGGTCG AGAGCTCGAT CAGCTACCTG TTGGCGCAGC TCGACGCCGG CGCCGAAGTG
CTGCAGATCT TCGACACCTG GGCCGGCGTG CTGCCGCCGC GCGAATTCGA GCGCTGGTCG
ATCGAACCGA CCCGCCGCAT CGTCGAAGGC GTGCGCAAGG TCAAGCCGGG CGCCAAGATC
ATCGGCTTCC CGCGCGGCGC CGGCGCGATG CTGCCGGCGT TCGTCGAACG CACCGGCGTC
GACGGCGTGT CGATCGATTG GACCGCCGAG CCGTCCTTCG TTCGCGAGAA GGTGCAAAGC
AAGGTCGTGG TGCAGGGCAA TCTCGATCCG CTGGTTCTGA TCGCCGGCGG TGCTGCGCTC
GACGAAGCGG TCGACGACGT GCTGAACAGC TATTCCGGCG GCCGCCACAT CTTCAACCTC
GGCCACGGCA TCCAGCCGGA AACCCCGATC GCTCACGTCG AGCAGATGAT CAAGCGGGTG
CGCGACTACA AGGGCTGA
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| Protein sequence | MWMMRQAGRY LPEYREVRAK AGGFLDLCFN AEFAAEVTLQ PIRRFGFDAA IIFSDILVVP
YALGRAVRFE VGEGPRLEPL DSPDKVGTLS KAIDLSKLQP VFDALKIVRR ELPAETALIG
FCGSPFTVAT YMVAGHGTPD QAPARNMAYQ HPGAFAKIID VLVESSISYL LAQLDAGAEV
LQIFDTWAGV LPPREFERWS IEPTRRIVEG VRKVKPGAKI IGFPRGAGAM LPAFVERTGV
DGVSIDWTAE PSFVREKVQS KVVVQGNLDP LVLIAGGAAL DEAVDDVLNS YSGGRHIFNL
GHGIQPETPI AHVEQMIKRV RDYKG
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