| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1227 |
|---|
| Symbol | |
|---|
| ID | 3969104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1343315 |
|---|
| End bp | 1345474 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637924338 |
|---|
| Product | glycogen debranching protein GlgX |
|---|
| Protein accession | YP_531109 |
|---|
| Protein GI | 90422739 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000170759 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA TGCCGAGGAT TTCCACCGCC CAGTCTGTGG CGTCGCCCGC TCGCCACCGC
GTGCTCGAAG GCCGACCGTT TCCGCTAGGG GCCAACTGGG ACGGCCTGGG GGTGAATTTC
GCGCTGTTTT CGGCCAACGC CACCAAGGTC GAGCTGTGCC TGTTCGACAA TGACGGGCTG
CGCGAATTGG AGCGGATCGA ACTGCCGGAA TACACCGACG AGGTCTGGCA CGGCTATCTG
CCTGACGCGC GGCCCGGACA AGTCTACGGC TACCGCGTTC ACGGCCCCTA TGCACCGGCC
GAAGGCCACC GCTTCAACCC CAACAAGCTG CTGCTGGATC CCTACGCCAA GCAGATCGTC
GGCGAGTTGC AATGGGATCC GGCGCTGTTC GGTTACACCC TCGGCTCGCC GGATGCCGAT
CTGTCGTTCG ACCGGCGCGA CAGCGCCGCG TTCGTGCCGA AATGCCGGGT GATCGATCCG
GCCTTCACCT GGGGCGAGGA CCGCCGGCCG CAAATCCCCT GGGAGCGGAC GATTTTCTAC
GAGGCGCACG TCCGCGGCTA CACCATGAAG CACCCCGCCG TGCCGGAAGC GCTGCGCGGC
AGCTTCGCCG GCATGATGCA TCACGAAGTG ATCGACTACA TCCGCAAGCT CGGCATCACC
GCGCTGGAGC TGTTGCCGAT CCACGCCTTC GTCGACGACA GTTACCTGGT CGAGAAGGGC
AAGCACAATT ATTGGGGTTA CAACACCATC AGCTTCTTCG CGCCGCAAGC GCGCTATTTG
TCCGGGCCGT TCGTCAACGA GTTCAAGGAA ATGGTGGCGC AGTTTCACCG CGTCGGGATC
GAGATCATCC TCGACGTGGT CTACAACCAC ACCGCCGAAG GCAACGAACT CGGACCGACG
CTGTCGTTCA AGGGCATCGA CAACGCCTCG TACTATCGGC TCGCGCCGGA TCGGCGCTAC
TACATCAACG ACACCGGCAC CGGCAACACC GTCAACCTGT CGCACCAGCG GGTGCTGCAG
ATGGTCGCCG ATTCGCTGCG CTATTGGGCG CAGGAGACCC GGGTCGACGG CTTCCGCTTC
GATCTCGCCA CCATTCTAGC CCGCGAGCCG TACGGCTTCG ACGAGGGCGG GGGCTTTCTC
GACGCCTGCC GGCAGGATCC GGTGCTGAGC CAAGTCAAAT TGATCGCCGA GCCGTGGGAT
TGCGGGCCGG GCGGTTATCA GGTCGGGCAC TTTTCGCCGG GCTGGGCGGA ATGGAACGAC
CGTTTTCGCG ACACCACCCG GGCGTACTGG AAGGGCGACG AAGGCAAGCT CGCGGAGCTT
GCCACCCGGT TGTCCGCCTC GCCGGATCTG TTCAACAAGC GCGGCCGCAA GCCGTGGGCT
TCGGTCAACT TCGTCACGGC CCATGACGGC TTCACGCTGA ACGATCTGGT TTCCTACAAC
CACAAGCACA ACGAGGCCAA CGGCGAGGAC AATCGCGACG GTCATTCGCA TAATTTGGCC
TGGAATCACG GCGTCGAAGG ACCCACCGAC GATCCGGAGA TCCGCGAATT GCGTTTCCGG
CAGATGCGCA ATCTGTTGTC CACCCTGCTG TTGTCGCGCG GCACCCCGAT GATCCTGGCC
GGCGACGAAT TCGCCCGTTC GCAGCAGGGC AACAACAACG CCTACGCGCA GGACAACGAG
ATCAGCTGGC TGGATTGGGA GGGCATTGAT GAGGACGGCC GCCGCTTGAT CGAGTTCACG
CAGCGTCTGA TCGAGACCCG GCAACGCCAA CCGCTGTTTC ACCGCGGCCG CTTTCTAACC
GGGGCATACA ACGAAGAACT CGGCGTCAAG GATGTCACCT GGGTCGATCC CAGCGGCGCC
GAAATGACTT GCGAGCAATG GAACGACGGC AATGCGCGCT GCGTCGGCAT GTTGCTCGAC
GGGCGCGCGC AGGTGACGGG CATCCGGCGC AAGGGGTCCG ACAACACGCT GTTTCTGTTG
TTCAACGCTC ACCATGAGAC GGTGACGTTT AAATTCCCGG CGGTGCCGCA GTGCCGCACT
TGGGAGTGTC TGATCGACAC CGATAAGCCA GGTGACGGCA AGCTCTCCCG GATCAAGAAA
GAGGGCCACT ACGACATGGT GGGACGCTCG TTATCGCTTT GGGAGGGGCG GCAGGCCTGA
|
|---|
| Protein sequence | MNQMPRISTA QSVASPARHR VLEGRPFPLG ANWDGLGVNF ALFSANATKV ELCLFDNDGL
RELERIELPE YTDEVWHGYL PDARPGQVYG YRVHGPYAPA EGHRFNPNKL LLDPYAKQIV
GELQWDPALF GYTLGSPDAD LSFDRRDSAA FVPKCRVIDP AFTWGEDRRP QIPWERTIFY
EAHVRGYTMK HPAVPEALRG SFAGMMHHEV IDYIRKLGIT ALELLPIHAF VDDSYLVEKG
KHNYWGYNTI SFFAPQARYL SGPFVNEFKE MVAQFHRVGI EIILDVVYNH TAEGNELGPT
LSFKGIDNAS YYRLAPDRRY YINDTGTGNT VNLSHQRVLQ MVADSLRYWA QETRVDGFRF
DLATILAREP YGFDEGGGFL DACRQDPVLS QVKLIAEPWD CGPGGYQVGH FSPGWAEWND
RFRDTTRAYW KGDEGKLAEL ATRLSASPDL FNKRGRKPWA SVNFVTAHDG FTLNDLVSYN
HKHNEANGED NRDGHSHNLA WNHGVEGPTD DPEIRELRFR QMRNLLSTLL LSRGTPMILA
GDEFARSQQG NNNAYAQDNE ISWLDWEGID EDGRRLIEFT QRLIETRQRQ PLFHRGRFLT
GAYNEELGVK DVTWVDPSGA EMTCEQWNDG NARCVGMLLD GRAQVTGIRR KGSDNTLFLL
FNAHHETVTF KFPAVPQCRT WECLIDTDKP GDGKLSRIKK EGHYDMVGRS LSLWEGRQA
|
|---|
| |