| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1226 |
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| Symbol | |
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| ID | 3969103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1341269 |
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| End bp | 1343089 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637924337 |
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| Product | malto-oligosyltrehalose trehalohydrolase |
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| Protein accession | YP_531108 |
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| Protein GI | 90422738 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00014038 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACCAAG TTTCCCCGCC CGCTCCGCCC ACCCGATTCG GCCCCGAGAT CGACGACCAG
GGGGTGCTGT TTCGGTTATG GGCGCCAAGC CAAAACCAGG TGACGGTGGT TCTTGAAGGC
GGCAGTGCGC TGGCGATGAA CAAAACCGAC CTCGGCTGGC ACAGTTTGCT GGTTCAGGAG
GCCGGCCCCG GGACCCGCTA TCGGTTTCGC CTGGCCGACG GCCTGGAGGT GCCCGACCCG
GCGTCGCGTT ATCAACCGGA GGACGTTCAC GGTCCGAGCG AAGTGGTCGA TGCCATGGCG
TTCGCCTGGT CCGACCACGG CTGGCGCGGC CGGCCCTGGG AAGAAGCGGT GGTCTACGAG
CTGCACGTCG GCGCCTTCAC CGAACCAGGT ACCTTTGCCG CCGCGATCGA CCGGCTGGAT
TATCTCGCCG AACTCGGCGT CACCGCGATC GAATTGATGC CGGTGGCGGA GTTTCCCGGC
GCCCGCAATT GGGGCTACGA TGGCGTGCTG CTGTTTGCGC CCGACGCCAG CTACGGGCGG
CCGGACGACA TGAAGGCGCT GGTCAACGCC GCCCATGCCA AGGGCATCAT GGTGTTTCTC
GACGTGGTCT ATAACCATTT CGGGCCCGAC GGCAATTATC TCGCCGCCTA CGCGCCGATC
TTCAACGACC AGCACCAGAC CCCGTGGGGC GCGGCGGTCA ATTACGACGC GGCCGGATCG
GAGACGGTGC GGGAATTCGT GATCCAGAAC GCGATCTACT GGATCGACGA GTTTCACCTC
GATGGACTGC GGTTCGACGC GGTGCATGCC ATCAAGGACG ACAGCGACCC GCATCTGTTG
GCGGAGATCC CCTCGCGATT GCGCGCCAGC GGCATCAACC GGCCGATCCA TCTGATGCTG
GAGAACGAGG AGAACGAGGT GGCGAGGCTG GCCCGCGACG TCGACGGCGA GCCGCAGCAA
TACACCGCGC AGTGGAACGA CGACCTGCAC CACGTGCTGC ACACCGCCGC CAGCGGCGAA
CGGTCGGGCT ACTACGCCGA ATATGCCGGC GACACCGAAA AACTCGGTCG CGCCTTGGCT
GAGGGCTTCG CGTTCCAGGG CGACCATATG CGTTACCGCG ACCGCAGCCG CGGCGCGCCC
AGCCGTCACT TGCCGCCCAC CGCGTTCGTC GGCTTCATCC AAAACCACGA CCAGATCGGC
AATCGCGCCT TTGGCGAACG GCTGACCGCG TTCGCGCCGG CGGTCGCCGT GCAAGCGGTG
GCGGCGGTCT ATCTACTGCT CCCGCAGATT CCGATGCTGT TCATGGGCGA GGAATTCGGC
TCGTCGCGGC CGTTTCCGTT CTTCTGCGAT TTTTCCGGCG ATCTCGCCGA CGCGGTCCGC
GAGGGACGCC GCAAGGAGTT CGCGCGGTTT CCGGAATTCG CCGATCCGCA GATGCGCGAA
GCCATCCCCG ACCCCGGCGC CGCCGGGACC TTCGCGGCCG CAAAGCTCGA CTGGAACGAA
CCCCCACGCG AGCTCCATGC GCAATGGCTA GAGTTTTATC GCGCCCTGCT GGCGATCCGG
CATCGCGAGA TCGTGCCGAG GCTGCAAGCC ATCGGCGGCA ACGCCGGCCG GTTCAAGGTT
CTCGGACGCC TGGCGGTGCA GGTCGAGTGG ACCCTGGCGG ATGGAGCACA TTTGACGCTG
ATGGCTAACC TGACCGACCA GCCGCTCCCG GGGATCTCGC GGCCGAGCGG CCGCCGCTTA
TGGCCGACCG CGCCCGTGGC GTCGTCGACG CTGGAGCCCT GGCAGGTGGT GTGGTCGATC
GCCGATGCGG GTCAAGCCTG A
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| Protein sequence | MDQVSPPAPP TRFGPEIDDQ GVLFRLWAPS QNQVTVVLEG GSALAMNKTD LGWHSLLVQE
AGPGTRYRFR LADGLEVPDP ASRYQPEDVH GPSEVVDAMA FAWSDHGWRG RPWEEAVVYE
LHVGAFTEPG TFAAAIDRLD YLAELGVTAI ELMPVAEFPG ARNWGYDGVL LFAPDASYGR
PDDMKALVNA AHAKGIMVFL DVVYNHFGPD GNYLAAYAPI FNDQHQTPWG AAVNYDAAGS
ETVREFVIQN AIYWIDEFHL DGLRFDAVHA IKDDSDPHLL AEIPSRLRAS GINRPIHLML
ENEENEVARL ARDVDGEPQQ YTAQWNDDLH HVLHTAASGE RSGYYAEYAG DTEKLGRALA
EGFAFQGDHM RYRDRSRGAP SRHLPPTAFV GFIQNHDQIG NRAFGERLTA FAPAVAVQAV
AAVYLLLPQI PMLFMGEEFG SSRPFPFFCD FSGDLADAVR EGRRKEFARF PEFADPQMRE
AIPDPGAAGT FAAAKLDWNE PPRELHAQWL EFYRALLAIR HREIVPRLQA IGGNAGRFKV
LGRLAVQVEW TLADGAHLTL MANLTDQPLP GISRPSGRRL WPTAPVASST LEPWQVVWSI
ADAGQA
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