Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1221 |
Symbol | |
ID | 3969098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1336452 |
End bp | 1338050 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637924332 |
Product | periplasmic sensor hybrid histidine kinase |
Protein accession | YP_531103 |
Protein GI | 90422733 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00178023 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTGGGCAT TTCTGCAAGG CTTGTTGGAC ACTTCGACGT TCTCGCCTCA CGGAATTTGC CTGCTGTGGG AACCCGGACT GATCTGGCTG CATGTGGTGT CCGACGCCGC AATCGCGCTG GCATATTTCT CGATCCCGTT CGCGTTGTCG TATTTCGTCG CCAAGCGACC GGACGTCGAA TTCGGGTGGG TGTTTTGGGC CTTCTCGATC TTCATCTTGG CTTGCGGCTT CACCCACATC TTCGCCATCG TGACGTTGTG GATTCCGATC TACGAACTGG AAGGGATCAT CAAGGCGCTC ACCGCGATCG CTTCGCTGGT CACCGCCGCG ATGCTGTGGC CGCTGTTGCC GAAACTGCTC GCGGTGCCGT CACCGTCGCA ATTGCGAGAG GCGCAGCATG CCTTGCACAT GGAGACGTTG CAGCGCCGTG AGGCGGAAGA CATGCTGCGG CAGTCGCAAA AGATGGAAGC CGTCGGACAA TTGACCGGCG GCGTGGCGCA CGACTTCAAT AATCTGCTCA CCATCATCAT CGGCAATCTG GAGATTGCGC AACGCGACCT CGGCAAGCTG CGCGACGGCG TCGATGGCCG GCTGCGTCGG CTGATCGGCG GCGCGATGTC CGGTGCGCAG CGCGCTGCGA CCTTGACCAG CCGGCTGTTG GCGTTTGCCA GGCGGCAGCC GCTCGACCCC AAGGCCTGCA ATCTCGACCA ATTGCTGAAA GGCATGGCCG GCTTCTTCCG CAGCACATTG GGCGAGACCA TCGATCTGGA ATATGTCGGC ACCGCCGGGC TGTGGCAGGC CGAGATCGAT GCCAGCCATT TCGAGACGGC GATGCTCAAC CTAGTGGTCA ATGCCCGTGA CGCGATGCCC GACGGCGGCA AGCTCACCAT CGAAACCAGC AACGTGTTTC TCGACGAGGA CTATGCGCGT CGCCACGCCG AGGTCGCGGC CGGGCAATAT GTCCAAGTCG CAGTGACCGA TACCGGTGTC GGAATGACCG CCGACATCGT GGCCCGGGCC TTCGAGCCGT TCTTCACCAC CAAGGATGTC GGCCAGGGCA CCGGGCTGGG GCTCAGTCAG GTCTATGGCT TCGTCAAGCA ATCCAACGGT CACATCAAGA TCTATAGCGA GGTCGGCCAG GGCACCACCA TCAAGCTCTA TCTGCCGCGG CTGCATGCGA CGTCCGCAGC CGAGCAGGGG CCCGACGATA TTCAGGTCGG GGCGGCGCGG GCGGAGCAGA TCCTGGTCGT GGAAGACGAT CCGGAGGTCC GCGACTATGT CGTCGAAGTT TTGGAGGATC TCGACTACCG GGTGTTCCAG GCGGCCGATG CCGGCGCCGC GCTCGGCATC ATCGGCAAGC TCGACGGCGG ACTCGATCTG CTGTTGACCG ATGTGGTGCT GCCGGGAATG AACGGCCGCG AACTCGCCGA CCAACTGCGT CAGCAACGCC CAGATCTGAA AGTGCTGTTC ATGACGGGGT ATTCCCGCAA CGCGATCGTG CATCAGGGCA GGCTCGACGT CGGTGTCGAC CTTATTCAGA AACCGTTGTC GCAGGCGGCG CTGGCGGCAA AAATCCGCAG CATCCTCGAT CGCGTCTGA
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Protein sequence | MWAFLQGLLD TSTFSPHGIC LLWEPGLIWL HVVSDAAIAL AYFSIPFALS YFVAKRPDVE FGWVFWAFSI FILACGFTHI FAIVTLWIPI YELEGIIKAL TAIASLVTAA MLWPLLPKLL AVPSPSQLRE AQHALHMETL QRREAEDMLR QSQKMEAVGQ LTGGVAHDFN NLLTIIIGNL EIAQRDLGKL RDGVDGRLRR LIGGAMSGAQ RAATLTSRLL AFARRQPLDP KACNLDQLLK GMAGFFRSTL GETIDLEYVG TAGLWQAEID ASHFETAMLN LVVNARDAMP DGGKLTIETS NVFLDEDYAR RHAEVAAGQY VQVAVTDTGV GMTADIVARA FEPFFTTKDV GQGTGLGLSQ VYGFVKQSNG HIKIYSEVGQ GTTIKLYLPR LHATSAAEQG PDDIQVGAAR AEQILVVEDD PEVRDYVVEV LEDLDYRVFQ AADAGAALGI IGKLDGGLDL LLTDVVLPGM NGRELADQLR QQRPDLKVLF MTGYSRNAIV HQGRLDVGVD LIQKPLSQAA LAAKIRSILD RV
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