| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1218 |
|---|
| Symbol | |
|---|
| ID | 3969095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 1332450 |
|---|
| End bp | 1334117 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637924329 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_531100 |
|---|
| Protein GI | 90422730 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0270957 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATGA TTGGTTTGGT GGCTCGGCGC ACAGCCGCAG CCGTGTTCGT GCTGACGACC
GCGAGTGCGA TCGCGCTGCC GCAATCTGCC GGCGCGGAAG CCGTGCTGCG CATCGGCATG
ACAGCCGCAG ACGTGCCGCG CACGCTCGGC CAACCCGATC AGGGCTTCGA AGGCAATCGC
TTCACTGGCC TCACCATGTA CGACGCGCTG ACGATGTGGG ACCTGTCGTC TGCAACCAAA
GCCAGCGTGG TGATCCCGGG GCTTGCCACC GAATGGGCGG TGAATGAGAG CGATAAGACC
AAATGGACCT TCAAGCTGCG TCCCGGCGTC AGCTTTCATG ACGGCTCGCC GTTCAACGCC
GATGCGGTGG TCTGGAATGT GGAGAAGGTG CTGAAGCAGG ACGCGCCGCA ATTCGACGCC
AGCCAGGTCG GCGTCACCGC ATCGCGGATG CCGACATTGG TCTCGGCGAA GAAGATCGAC
GACATGACGG TGGAACTGAC CACCAAGGAG CCGGACAGCT TCCTGCCGAT CAACCTCACC
AACCTGTTCA TGGTCAGCCC GAGCAAGTGG CAGGCGTTGT ATGAGAAGGC CGAAGGCGCC
GACGCCAAGG CGAAGTCGCA GGCCGCCTGG GCGTCGTTCG CCAAGGACGC CTCCGGCACC
GGGCCGTGGA AGATGTCGAA GTTCACGCCG CGCGAACGGC TCGAACTGGT GAAGAACGAC
AAATATTGGG ACGCCACACG CGTGCCGCAT GTCGACCGCC TAGTGCTGTT GCCGATGCCG
GAAGCCAACG CCCGCACCGC GGCGCTGTTG TCCGGCCAGG TCGACTGGAT CGAGGCGCCC
GCCCCCGACG CGGTCAAGGA AATCACCGCG CGCGGTTTCA AGATCGAGAA GAACGAGCAG
CCGCACGTCT GGCCCTGGCA GTTCTCCCGC GTCGAAGGCT CGCCGTGGAA CGACATCCGG
GTGCGCCGCG CCGCCAATCT GTGCATCGAT CGCGAAGGCT TGCGCGACGG CCTGCTCGCA
GGATTGATGG TGCCGGCGAC CGGCACCTTC GAGCCCGGCC ATCCGTGGCG CGGCAAGCCG
GCATTCCAGA TCAAATACGA TCTGCCGGCG GCACAGAAGC TGATGAAGGA AGCCGGCTAC
GGCCCGACCA AGAAGCTCAG CGTCAAGGTG CAGACCTCGG CGTCGGGCTC CGGCCAGATG
CTGCCGCTGC CGATGAACGA ATATCTGCAG CAGGCGCTCG CGGAGTGCTA CTTCGACGTC
AAGCTCGACG TCATCGAGTG GAACACGCTG TTCACCAATT GGCGCCGCGG CACTAAGGAT
CCCTCCGCCA ACGGCGCCAA CGCCACCAAC GTCACCTATG CGGCGATGGA CCCGTTCTTT
GCGATGGTGC GCTTCCTGCA GTCGTCGATG GCGCCGCCGG TGTCGAACAA TTGGGGCTTC
ATCAACAACC CGAAGTTCGA CGCGCTGGTG ACCAAGGCGC GCACCACCTT CGATGCCTCG
CTGCGCGACG AAGCCTTGGC CGAACTGCAC GCCGCCTCGG TCGACGACGC CGCCTTCCTC
TACGTCGCCC ACGACGTCGG CCCGCGCGCG CTGAGCCCGA AGGTCAAGGG CTTCGTGCAG
CCGAAGAGCT GGTTCGTCGA CTTCTCGCCG GTGACGCTGG CGCCGTAA
|
|---|
| Protein sequence | MRMIGLVARR TAAAVFVLTT ASAIALPQSA GAEAVLRIGM TAADVPRTLG QPDQGFEGNR
FTGLTMYDAL TMWDLSSATK ASVVIPGLAT EWAVNESDKT KWTFKLRPGV SFHDGSPFNA
DAVVWNVEKV LKQDAPQFDA SQVGVTASRM PTLVSAKKID DMTVELTTKE PDSFLPINLT
NLFMVSPSKW QALYEKAEGA DAKAKSQAAW ASFAKDASGT GPWKMSKFTP RERLELVKND
KYWDATRVPH VDRLVLLPMP EANARTAALL SGQVDWIEAP APDAVKEITA RGFKIEKNEQ
PHVWPWQFSR VEGSPWNDIR VRRAANLCID REGLRDGLLA GLMVPATGTF EPGHPWRGKP
AFQIKYDLPA AQKLMKEAGY GPTKKLSVKV QTSASGSGQM LPLPMNEYLQ QALAECYFDV
KLDVIEWNTL FTNWRRGTKD PSANGANATN VTYAAMDPFF AMVRFLQSSM APPVSNNWGF
INNPKFDALV TKARTTFDAS LRDEALAELH AASVDDAAFL YVAHDVGPRA LSPKVKGFVQ
PKSWFVDFSP VTLAP
|
|---|
| |