Gene RPC_1213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1213 
Symbol 
ID3969090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1327744 
End bp1329159 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content68% 
IMG OID637924324 
Productamidase 
Protein accessionYP_531095 
Protein GI90422725 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.590428 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGGGA CTGATCCGAC ACTGTTGTCG CTAACCGAAA TCGCGCAGGC GATCGCGCAG 
AGGAAATTCT CATCGCGCGA GGCGACGCAG GCCTGCCTGA ACCGCATCGC GGCGTTGCAG
CCCAAGCTCA ACGCCTTTGT CGCGATCGAG CCCGACGAAG CGCTGGCCGC GGCCGACGCC
GCCGATGCGG CGCTGGCGCG TGGCGAGAGC AAAGGCGCGC TGCATGGCGT GCCGCTGGCG
CACAAGGACA TGTATTACGA CCAGGGCTAC GTCGTCACCT GCGGCTCCAA GATCCGCCGC
GACTTCGTGG CGACCACCAC CTCGACCGCG CTGCAACGGC TGAAGGACGC CGGCACGGTG
CGGCTCGGCT CGCTGCAGAT GGCGGAATTC GCCTATGGGC CGACCGGCCA CAACGCGCAT
TTCGGCGCGG TGCATAATCC GTGGGCCATT GAGCGCATCA CCGGCGGTTC GTCCTCGGGC
TCAGGCTCGG CGGTCGCGGC ACGGCTGACC TATGCGGCGC TCGGCTCCGA CACCGGCGGC
TCAATCCGGA TGCCGGCGCA TTTCTGCGGC GTCACCGGCT TGAAGACCAC GGTCGGCCTG
ATCAGCCGCG CCGGCGCGAT GCCGCTGTCG CAATCGCTCG ACACCGTCGG GCCCTTGGCG
CGCACGGCCG AAGACTGCGC GCTGCTGCTC GGCCTGATGG CCGGCGCCGA TCCCGCCGAT
CCGACCTGCA GTTCGCGCGA CGTCCCAGAC TATAGCGCGG CGACGAAGGG CAAACTGAGC
GGCGTCCGCA TCGGGCTTCC CAGCGCATTC TATGTCGACG ACCTCGATCC CGAAGTCGCA
CGCGTGCTCG ACGACACCGT TGCAACGCTG CAACGCGAAG GCGCCGACAT CGTCAAGGTC
GAGCTGCCGG ATCAGCGCCA GCTCTCGGCA GCGTGCCAAT TGGTGCTCGC GGTCGAGGCC
GCCGGCTTTC ACACAAGCTG GATGATCGAG CGGCCGCAGG ACTACGGCCC GCAAGTGTTG
ATGCGGCTGC AGAACGCGCT GGCGATTCCG GCCGTGACCT ATCTTGAAGC GATGCGCTGG
CGCGGCGTGG CGCTGGCCGC GCATCTCGCA GCGACCGCCG GCGTCGACGC GGTGCTGGCG
CCGGTGGCGC CGGTGGCAGC ACCGACCATC GTCGAGAGCG ACGTCGGCAA TTCGCTCGAC
GCCGAGGCGG TGATCCAGCG GCTGACGCGC TTTACCCGGC CGATCAACTA TCTCGGCCTG
CCGGCGCTGG CGCTGCCCTG CGGCTTCACC AAAGCCCTGC TGCCGGTCGG GCTGCAGCTG
ATCGGCAAGC CGTTCGACGA GGCGATGCTG CTGCGGATCG GCGCGGCCTG GCAGCGCGTC
ACTGACTTTC ACAGCAAGAC GCCGGAGCTT GCATGA
 
Protein sequence
MNGTDPTLLS LTEIAQAIAQ RKFSSREATQ ACLNRIAALQ PKLNAFVAIE PDEALAAADA 
ADAALARGES KGALHGVPLA HKDMYYDQGY VVTCGSKIRR DFVATTTSTA LQRLKDAGTV
RLGSLQMAEF AYGPTGHNAH FGAVHNPWAI ERITGGSSSG SGSAVAARLT YAALGSDTGG
SIRMPAHFCG VTGLKTTVGL ISRAGAMPLS QSLDTVGPLA RTAEDCALLL GLMAGADPAD
PTCSSRDVPD YSAATKGKLS GVRIGLPSAF YVDDLDPEVA RVLDDTVATL QREGADIVKV
ELPDQRQLSA ACQLVLAVEA AGFHTSWMIE RPQDYGPQVL MRLQNALAIP AVTYLEAMRW
RGVALAAHLA ATAGVDAVLA PVAPVAAPTI VESDVGNSLD AEAVIQRLTR FTRPINYLGL
PALALPCGFT KALLPVGLQL IGKPFDEAML LRIGAAWQRV TDFHSKTPEL A