| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1200 |
|---|
| Symbol | |
|---|
| ID | 3969077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1314483 |
|---|
| End bp | 1316090 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637924311 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_531082 |
|---|
| Protein GI | 90422712 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAT GTCTGCGCGG CCCGCGTCGC TCGATGTCCT CATGGGGATT ACGCGGCGTT
ATCGCATCTG TGGTGTTGGC GTTATCGCTA CCGGCCTCGG CGAAGACGCT GACCGCGGTG
ATGCATTCCG ATCTGCGGGT GATCGATCCG GGGCTGACCA CCGCCTACAT CACCCGCGAC
CACGGCTATA TGGTGTACGA CACGCTGCTG GCGATGGATG CCAATTTCAA AGTGCAGCCG
CAGATGGCGG ACTGGAAGGT GTCCGACGAC AAATTGACCT ACACCTTCAC CTTGCGCGAC
GGGTTGAAGT GGCACGACGG TGCGCCGGTC ACCGCGGAGG ATTGTGTCGC ATCGTTGCGG
CGCTGGGGCT CCTCCGACGG CATGGGCCAG AAGCTGATGG ACTTCACCGC GTCGCTGGAG
GCCACCGACG CCAAGACCAT CACTCTTAAA TTGAAGGAGC CCTACGGGCT GGTGCTGGAA
TCGATCGGCA AGCCGTCGTC GCTGGTGCCG TTCATGATGC CGAAGCGCAT CGCCGAGACC
CCGGCCGGCA AGGCGATCTC CGAGCAGATC GGCTCCGGGC CGTTCAAATT CGTCGCCGCC
GAGTTCCAGC CCGGCGTCAA GGCGGTGTAT GTCAAGAACG CCGACTATGT GCCGCGCGCC
GAGCCGCCGA GCTGGACCTC GGGCGGCAAA GTGGTGAAGG TCGATCGCGT CGAATGGCTG
ACCATGGCCG ACGCGCAGAC CGCGGTGAAC GCGCTGCAGT CCGGCGACAT CGATTTTCTG
GAGAATCCCT CGTTCGACAT CCTGCCGATG CTGCTGGCCG ACAGCGAGCT GACGGTGCAG
ACGCTGAGCC CGCTGGGGTT TCAGACTCTG GGGCGGATGA ACTTCCTGTA TCCGCCGTTC
GACAACATCA AGGTGCGGCG CGCCGCGTTC CTCGCCATGA GCCAGAAGCC GGTGCTCGAC
GCGCTGGTCG GCAATCCGGA CTACTACAAG ATCTGCGGCG CGGTGTTCGG CTGCGACACG
CCGCTCTCCA CCGACGTCGG CTCGGAGAGC CTGGTGAAGG GCAACGGCAT GGCGGAGGCC
AAGAAGCTGT TGGCCGAGAG CGGCTACGAC GGCACCCCGA TCGCGCTGAT GGCGCCGACC
GACGTCAACA CGTTGCGGGC GCAGCCGATC GTGGCGGCGC AATTGCTGCG CGACGCCGGC
TTCAAGGTCG ACGTGCAGGC CACCGACTGG CAGACCGTGG TGACGCGGCG CGCCAGCCAG
AAGCCGGTGA AGGACGGCGG CTGGAACATC TTCTTCACCA ACTGGGCCGG CCCGGAAATT
CTCAACCCGA TCGCCAACGT CTCCACCAGC GGCAAGGGCA AGAGCGGCGG CTGGTTCGGC
TGGCCGGACG ATCCCGCCAT GGAAACGCTG CGCGACAAGT TCGCCCGCGC CAAGGCGCTG
GATGAGCAGA AGCAGCTCGC CGAAGCGATC CAGGCGCGGG TCTATGAGCA GGTGCTGTAT
ATCCCGCTCG GTCAATACAA GGTGCCGAGC GCCTGGCGCA AATCGCTGTC CGGCGTGCTC
AGCGGCCCGG CGACCCCGGT GTTCTGGAAT ATCGACAAGA AGGAGTAG
|
|---|
| Protein sequence | MSECLRGPRR SMSSWGLRGV IASVVLALSL PASAKTLTAV MHSDLRVIDP GLTTAYITRD
HGYMVYDTLL AMDANFKVQP QMADWKVSDD KLTYTFTLRD GLKWHDGAPV TAEDCVASLR
RWGSSDGMGQ KLMDFTASLE ATDAKTITLK LKEPYGLVLE SIGKPSSLVP FMMPKRIAET
PAGKAISEQI GSGPFKFVAA EFQPGVKAVY VKNADYVPRA EPPSWTSGGK VVKVDRVEWL
TMADAQTAVN ALQSGDIDFL ENPSFDILPM LLADSELTVQ TLSPLGFQTL GRMNFLYPPF
DNIKVRRAAF LAMSQKPVLD ALVGNPDYYK ICGAVFGCDT PLSTDVGSES LVKGNGMAEA
KKLLAESGYD GTPIALMAPT DVNTLRAQPI VAAQLLRDAG FKVDVQATDW QTVVTRRASQ
KPVKDGGWNI FFTNWAGPEI LNPIANVSTS GKGKSGGWFG WPDDPAMETL RDKFARAKAL
DEQKQLAEAI QARVYEQVLY IPLGQYKVPS AWRKSLSGVL SGPATPVFWN IDKKE
|
|---|
| |