| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1191 |
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| Symbol | |
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| ID | 3969146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1303648 |
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| End bp | 1305285 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637924302 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding region |
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| Protein accession | YP_531073 |
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| Protein GI | 90422703 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.492896 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCGAC CGGCCAGCGA CATCCTGCTC GACATTCTGC GCGACGAGGG CATCACCCAC
GTGTTCGGCA ATCCGGGCTC GACCGAGATG CCGCTGATGG ACGCGCTGGT CGACGCCCCC
GACATCCACT ACGTGCTGGG GCTACAGGAG GCCACCGCGG TCGGCATGGC CGACGGCTGG
GCGCTGACCT CGGGCAAGAC CGGCTTCGTC AATCTTCATG CGATGGGCGG GCTCGGCAAT
GCGATGGGTG TGCTGGTCGC CTCCAAGGCC AGCGAGACGC CGCTGGTGGT CACCGCCGGC
CAGCAGGATA CGCGACATCT GGCGACCGAG CCGTGGCTGT CCGGCGATCT GGTGGCGCTC
GCCGCCCCGG TGACCAAATG GGCCAAGGAG GTGCATCGCG GCGAGGACCT CGGCGCAGCA
TTGCGCCGCG CCTTTGCGAT CGCCCGCACC CCGCCCTGCG GCCCGGTGTT CCTGTCGCTG
CCGATGGACG TGCTCGATCA GCCGGTCGAA GGCTCGACGC CGCCGGCCTC GGCGCCGCCG
CGGCTCGGCC CCTCGCCGGA TTCCGATGGC TTTGCCGACA TGCTGGCGCG CCATGATCCA
GAGAAAGTAT TCGTGCTGCT CGGCGACGAT CTGCCGGCCG GCGCGGCGCC GGGCCTGGTC
GCCTTCGCGG AGGCCGGCGG CTATGCGGTG GCGGGCATGC AACTGACCTC GCGCTCGGCA
TTTCCCTCGG CGCATCCGTG CTGGGCCGGC GTGCTGAAAC CGGACTTCGC GGCGATCCGC
GAACGGCTGG AACGCGTCGA AGCGCTGGTG CTGGTCGGCG GCCGCGCCTT CGTCGCCTAT
CCGTATCGCG ACGTCCGGCC GATTCCCGAC GGCGTGAAGA TCTTGCACGT CGCCGACAAT
CCGGACGCGT TCGGCCGCGA ACACCCGGCG CACATGGCGT TGCTCGGCGA TATCGGCGCG
ACGCTGCAAT CCGCAGCGGC GCGGCTCGGC GGGCTGCTCG ACCGCAACAG CGTGGTGGCG
CGACTGGCGC AGCGCGATGC CACGAAGCAG GCGCAGATCG CCAAAGTCCG CGCGGAGATT
CTCAGCACCG CGCATGAGAC GCCGCTGTCA CCCGACGCCG CGGTGCTCAC CGTGTCGGAC
GCGCTGCCCG CCGACACGCT GCTCGCCAAT GATTCCGCGG CGACCTTCGG CCAGGTGCAG
GACTTGCTGA TGACGCGGCC GGGGCGCTAC TTCTTCGCCC GCGGCGGCGT GCTCGGCTGC
AACATGCCGG CCGCGGTCGG CGCCGCACTG CTGCATGACG GGCCGGTGGC ATCGTTGGTC
GGCGACGGCG GCGCGATGTA TTCGCCGCAG GCGTTGTGGA GCGCGGCGCG CTATCGCGCC
AAGGTGCTGT TCATCGTGTT CAACAATCGC CGCTACGGCG TGCTGCAGAA CATCGCCAAG
CAGCTCGGCT GCAAGAACGC GGTCGCCGGC CGCTTCGTCG GCATGGATGT CGACGATCCG
GCGATCGACT TCATGGCGCT GTCGAAATCG ATGGGCGTAC CGTCGGTGCA GGCCGACGCC
CCCGACGCGA TCCGCGCCGC GATCGCCGAA GCGCTCACCC GCGACGGCCC GTCGCTGATC
GAGATCGCGG TGAAGTAA
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| Protein sequence | MTRPASDILL DILRDEGITH VFGNPGSTEM PLMDALVDAP DIHYVLGLQE ATAVGMADGW
ALTSGKTGFV NLHAMGGLGN AMGVLVASKA SETPLVVTAG QQDTRHLATE PWLSGDLVAL
AAPVTKWAKE VHRGEDLGAA LRRAFAIART PPCGPVFLSL PMDVLDQPVE GSTPPASAPP
RLGPSPDSDG FADMLARHDP EKVFVLLGDD LPAGAAPGLV AFAEAGGYAV AGMQLTSRSA
FPSAHPCWAG VLKPDFAAIR ERLERVEALV LVGGRAFVAY PYRDVRPIPD GVKILHVADN
PDAFGREHPA HMALLGDIGA TLQSAAARLG GLLDRNSVVA RLAQRDATKQ AQIAKVRAEI
LSTAHETPLS PDAAVLTVSD ALPADTLLAN DSAATFGQVQ DLLMTRPGRY FFARGGVLGC
NMPAAVGAAL LHDGPVASLV GDGGAMYSPQ ALWSAARYRA KVLFIVFNNR RYGVLQNIAK
QLGCKNAVAG RFVGMDVDDP AIDFMALSKS MGVPSVQADA PDAIRAAIAE ALTRDGPSLI
EIAVK
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