| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1146 |
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| Symbol | |
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| ID | 3969503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1246328 |
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| End bp | 1247737 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637924256 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_531028 |
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| Protein GI | 90422658 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.890459 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.943452 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCCC CCGGCTTCAC CATCGCCGCC GGCGCCAGCG CGCCGGCGCG TTCGTCTGCG
TGGCGCATCG AGATCGGCGA GACGCTGTGG CTCGCCGCGC CGATGGCGCT GACCCAGCTC
GGCCAGATCG CGATGATGAC CACCGACCTG GCGCTGATCG GCCGGCTCGG CGATGCCGCG
ATGGCGGCGG CGGCGCTCGC CCATACCGTG CTGTTCATCG CCTTCATGCT CGGCATCGGG
CTGGTGGCGG CGGTGGCGCC GCTGGCGGCG CAGGGTTTTG GCGCGCGGGC GCCGCGTCAG
GTGCGGGCCT CGCTGCGGAT GGGCATCTGG GCGGCGCTGC TCGCCGGGAT CCCGCTGACG
CTCGTCCAGC TCTATGGCGA ACAGCTGCTG CTGGCGCTCG GCCAGCACTC CGACACCGCG
CAATTGGCCG GCCGCTATCT CGACGGGCTG GCCTGGTCGC TGGTGCCGTC GTGGATCTTC
ATCGCACTGC GCGGCTTCAT GGGCGCGGTG AACCGCCCGG CGCCGGCGCT GTGGATCATG
CTGGCCGCGG TGCCGATCAA TGCCGCGCTG GCTTACGCGC TGATCAACGG CGCGCTGGGG
CTGCCGCGGC TGGAGATTTT CGGCGCCGGT CTCGCCACCG CGCTGGTCTC GGTCGCGATG
TGCGGCGCAG CGCTGCTGGT GTGTTACGGC TGCCAACCGT TTCGCAAATA CCGCGTGCTG
GCGCAGTTCT TTCATCCGCA TTGGCCGCTG CTGCGGCGAC TGCTGGCGCT CGGGCTGCCG
ATCTCCGGCG CCTCGGCGCT GGAATACGGC GTGTTCGGCG CCGCCGCGCT CTTGATGGGC
CGGATCGGCA CCAGCGCGCT CGCCGCGCAT CAGATCGCGC TGCAGATCGC GGCGATCCTG
TTCATGGTGC CGCTCGGCAT CTCGCTCGCC GCCACGGTGC GGGTCGGCCA TGCGGTGGGC
CGCAACGATG CGGCCGGCGC CCGCCGCGCC GGCTTCGTCG CCATCGGGCT GGGACTGTTG
TTCATGGCGG CGATGACGCT GCTGGTGGCG CTGACCCGCC GGCAGATCCC GCAGCTGTTT
CTCGGCGACA GCGCGGCAGC CACCGAGACC ACGCGGATCA CCGCCGCGCT GCTGGTGGTG
GGAATCAGCT TCTTCATCGC CGACGGCCTG CAGGTGGTCG CCAACGGCGC GCTGCGCGGC
CGCAACGACA CCAAGATCCC GCTGTTGTTC GCGGCCTTCG GCTTCTGGGC GATCGGATTT
CCCTGCAGTT ACCTGCTCGG CTTCAACGCC GGGTTCGGCC CCGCCGGGGT GTGGAGCGGG
CTGTCGATCG GGCTGGCGAT CTACGCAGCA CTGCTGGTGT GGCGCTTCCA CCGGCTGACG
CTGCCGCCGC GCAACTTCCC CGCGGTCTGA
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| Protein sequence | MTSPGFTIAA GASAPARSSA WRIEIGETLW LAAPMALTQL GQIAMMTTDL ALIGRLGDAA
MAAAALAHTV LFIAFMLGIG LVAAVAPLAA QGFGARAPRQ VRASLRMGIW AALLAGIPLT
LVQLYGEQLL LALGQHSDTA QLAGRYLDGL AWSLVPSWIF IALRGFMGAV NRPAPALWIM
LAAVPINAAL AYALINGALG LPRLEIFGAG LATALVSVAM CGAALLVCYG CQPFRKYRVL
AQFFHPHWPL LRRLLALGLP ISGASALEYG VFGAAALLMG RIGTSALAAH QIALQIAAIL
FMVPLGISLA ATVRVGHAVG RNDAAGARRA GFVAIGLGLL FMAAMTLLVA LTRRQIPQLF
LGDSAAATET TRITAALLVV GISFFIADGL QVVANGALRG RNDTKIPLLF AAFGFWAIGF
PCSYLLGFNA GFGPAGVWSG LSIGLAIYAA LLVWRFHRLT LPPRNFPAV
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