| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1105 |
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| Symbol | fliF |
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| ID | 3969539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1207015 |
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| End bp | 1208649 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924216 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_530988 |
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| Protein GI | 90422618 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.915781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAATC GCGAATACGC GCAAAAGCTC TGGAGCAATC TGCTCGAGCT CGGGCCGCGG
CGGCTCACGG TGCTGGCGAT GGTCGGCCTC GCGGTGTTCT TCGGGGTCGG CGGCGGCGCC
TATTATCTCA GTCGGCCGGA ATTCAACGTG CTCTACTCGG GACTAAGCCG CGAGGACATC
ACCCGCGTCA GCGCGGTGCT GCGCGACGCC AACGTCCCCT TCGACGTCAA CGCCACCGGC
GACACGATTC TGGTGCGCCC CGGACAGGCC GCGCAGGCGC GGACGCTGCT CGCCGACAAG
GGGCTGCCGA GCAGCACCAG CGGCGGGTAC GAACTGTTCG ACAAGATCGG TTCGCTCGGC
CTGACGTCGT TCATGCAAGA GGTGACGCGG GTCCGCGCGC TGGAGGGCGA GATCGCCCGC
ACCATCCAGG TGATCAAGGG AGTCAAGGCC GCACGGGTTC ACATCGTGAT GCCGGCGCGC
GGCTCGTTCC GTCGCGAGCA GGCGCCGCCG ACCGCGTCGG TGGTGCTGCG CACGGATGGC
CCCGCCGACG CGAAGACCGC GCGCTCGGTT CGCCATCTGG TGGCGGCGGC GGTCCCCGGC
ATGACCCCCG ACAAGGTGAC GGTGCTGGAT AGCGACGGCT CGCTGCTCGG CGCCGACGAC
GACGGCACCG GCACCACGCC GACCACCATG GCCAACCTGC AGCGCGTGGT CAGCCGGCTG
ATTCAGGACA ACGTCAGCAA GGCGTTGACG CCTTATCTCG GGCTGGACAA TTTCGAAGTC
AGCGTCGCCA CCCAGCTCTC GACCGACAAG CGGCAGACCA ACGAGACGGT TTACGATCCG
GAGTCGCGGG TGCAGCGGTC GGTCCGCGCG GTGCGGGAGC GCGAAACGTC GCAAAGTCTC
GATCGGCAGA CGCCGACCAC GGTGCAGCAG AATCTGCCCG ACCAGCAGCT CAACGCCGGC
GGCGGCAAGA ATTCCAACGA CGAGAAGCAG CGCCGCGAGG ACGTCACCAA CTACGAAGTC
TCGTCGAAGA CCACGACGAC GGTGAGCGAC GGTTATGTGG TGAACAAGAT GTTCCTGGCG
GTGCTGGTCA ACCGGCCGCG GCTGATCGCC AGTCTCGGCG ACAAGGTCAG CGAATCCGCG
ATGGAGGCCA AGGTGGCGGA GATCTCGCAA CTTGCCGCCA CCGCCGCGGG GCTCGACCGC
CCGCGCGGCG ATCAGATCCA AGTCTCCGCG GTGGAATTCA TCGAAGGCGC GCGCGATCTG
GCGCCGGTCC CCGGCATCAC CTTCACCGAG GTGCTGATGC GGCAGTCCGG CAATTTCGTC
AGCGCCATCA CCATCCTCGC CGTGGCGGGG ATGCTGATCT GGTTCGGCTT GCGGCCGGCG
ATCAACGTGG TGCTGGCCAG TTCCAAGTCG AGCGAGGGGG CGCCGTTGCT GGCGGCCGAG
GCCGCCGCTC TGCTCGGCGC CGACGCCGCC GTGGCGGCGC AGATCGCCCG CGAGGCGATG
CCTAATCTGG TGCAGGACGT TTCGCGACGC GCGCAGCATG CGCCGCAGAA ACGCCTGGAG
CAGATCGTCC AGCTCGATGA GAAGCAGGCC GCGGCGATTC TCAAACAATG GATCCGGCAG
GAGGAACCCG CATGA
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| Protein sequence | MVNREYAQKL WSNLLELGPR RLTVLAMVGL AVFFGVGGGA YYLSRPEFNV LYSGLSREDI
TRVSAVLRDA NVPFDVNATG DTILVRPGQA AQARTLLADK GLPSSTSGGY ELFDKIGSLG
LTSFMQEVTR VRALEGEIAR TIQVIKGVKA ARVHIVMPAR GSFRREQAPP TASVVLRTDG
PADAKTARSV RHLVAAAVPG MTPDKVTVLD SDGSLLGADD DGTGTTPTTM ANLQRVVSRL
IQDNVSKALT PYLGLDNFEV SVATQLSTDK RQTNETVYDP ESRVQRSVRA VRERETSQSL
DRQTPTTVQQ NLPDQQLNAG GGKNSNDEKQ RREDVTNYEV SSKTTTTVSD GYVVNKMFLA
VLVNRPRLIA SLGDKVSESA MEAKVAEISQ LAATAAGLDR PRGDQIQVSA VEFIEGARDL
APVPGITFTE VLMRQSGNFV SAITILAVAG MLIWFGLRPA INVVLASSKS SEGAPLLAAE
AAALLGADAA VAAQIAREAM PNLVQDVSRR AQHAPQKRLE QIVQLDEKQA AAILKQWIRQ
EEPA
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