| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1080 |
|---|
| Symbol | |
|---|
| ID | 3969592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1183662 |
|---|
| End bp | 1185941 |
|---|
| Gene Length | 2280 bp |
|---|
| Protein Length | 759 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637924191 |
|---|
| Product | formate acetyltransferase |
|---|
| Protein accession | YP_530963 |
|---|
| Protein GI | 90422593 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1882] Pyruvate-formate lyase |
|---|
| TIGRFAM ID | [TIGR01255] formate acetyltransferase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCC AAGTGCAGAA CCCGATCGGC GAAGCGTTCG ACGCAATCCC GAGCGATCCG
TGGCGTGATT TCGAAACCGG CAACTGGACC CGCGAGATCG ACGTTCGTGA TTTCATCCAG
AAGAACGTCA CGCCGTGGGT GGGGGATGCG TCGTTCCTGG TGCCGGCGAC CGCGCGCACT
CAGGCGCTGT GGGCCAAGCT GAAGGATCTG TTGCAGCTCG AGCGCGACCA CGGCGGCGTG
CTCGACGTCG ACAGCAAGAC GTTCTCCTCG ATCGTGGCGC ATGGCGCGGG CTACATCGAC
CGCGAGCTCG AACAGATCGT CGGCCTGCAG ACCGACGCGC CGTTGAAGCG CGCGATCATG
CCGTTCGGCG GCTGGCGCAT GGTGAAGAAC GGGCTCGAAG CCTACGGCCT CAAAGCCGAT
CCGAGCTTCG AGAAGATCTT CCCCGGCATC CGCAAGACCC ATAACGACGC GGTGTTCGAC
GTCTATTCGC CCGACGCGGT GAAGTGCCGC AAGTCCGGCA TCATCACCGG GCTGCCCGAC
GCCTACGGCC GCGGCCGCAT CATCGGCGAC TATCGCCGCG TCGCGCTGTA CGGCGTGGCC
CGGCTGATCG AGGACAAGAA GGCGCAAGCC GCCAGCCTCG AACTCGACTC GCTCGACGAC
GCCGTGCTGC GGCAGCGCGA GGAGATCGCC GAGCAGATCC GCGCGTTGAA GGAACTGGTG
GTGATGGCGA AGGCCTACGG CTTCGACCTC GCCAAGCCGG CGCTGAACGC CCGCGAGGCG
ATCCAGTGGA CCTATTTCGC CTATCTCGCC GCGGTGAAGG AATCCAATGG CGCCGCGATG
TCGCTCGGCC GGGTGTCGAA CTTCATCGAC ATCTACGTCG AGCGCGACAT CGCCGAAGGC
GTGCTCGACG AAGCCACCGC CCAGGAGCTG GTCGATCACT TCGTCATGAA GCTGCGCATC
GTGCGCTTCC TGCGCACCCC GGAATACGAC GCGCTGTTCT CCGGCGATCC GACCTGGGTC
ACCGAATCGA TCGGCGGCAT GGGGCTGGAC GGCCGCGCGC TGGTGACCAA GTCGAGCTTC
CGCTTCCTGC ACACGCTGGA GACGCTCGGC CCGGCGCCGG AGCCCAACCT CACCGTGCTG
TGGTCGGACT ACCTGCCGCA GGGCTTCAAG GACTACTGCG CGCTGACCTC GATCCGCACC
TCGTCGATCC AGTACGAGAA CGACGATCTG ATGCGGGCCT ATTGGGGCGA CGATTACGGC
ATTGCCTGCT GCGTCTCCGC GATGCGGATC GGCAAGCAGA TGCAGTTCTT CGGCGCCCGC
GCCAACCTCG CCAAGACCAT GCTGTACGCC ATCAACGGCG GCCGCGACGA ACTGTCCGGC
GAACAGATCG GCCCGACCTT GTCGCCGGTG ACCGGCGACG TGCTCGACTA TGATGATGTG
AAAGCCAAGC TCGGCCCGAT GATGGACTGG CTCGCCAAGA CCTATATCGG CGCGCTCAAC
GCCATCCACT ACTGCCACGA CAAGTACATG TACGAGCGGA TCGAGATGGC GCTGCACGAC
CGCGACATCC TGCGCACCAT GGCCTGCGGC ATCGCCGGTC TGTCGGTGGC CGCCGACAGC
CTGTCGGCGA TCAAGCACGC CAAGGTCAAG GTGATCCGCG ACGCCCGCGG GCTTGCCACC
GACTTCGCGA TCGAAGGCGA GTATCCGGCG TTCGGCAACA ATGACGACCG CGTCGACGAG
ATCGCGATCT GGCTGGTCAA GGAGTTCATG GAGCGGCTGC GCAAGCAGAA GACCTATCGC
AACTCGGTCG CCACCATGTC GGTTTTGACC ATCACTTCCA ACGTGGTGTA CGGCAAGAAG
ACCGGCAACA CCCCGGACGG CCGCAAGGCC GGTGAGCCGT TCGCGCCGGG CGCCAACCCG
ATGCATCGCC GCGACGTCAA GGGCGCGGTG GCCTCGATGG CTTCGGTGGC GAAACTGCCC
TACGCGCATT CGCAGGACGG CATCTCCTAC ACCTTCACCA TCGTGCCCTC GGCGCTGGGG
GCCGGCGAAG CCGACCGCGT CGACAATCTG ACCGGCCTGC TCGACGGTTA CTTCGCGCAA
GGCGGCCACC ACATCAACGT CAACGTGTTC GACCGCGAGA CGCTGCTGCA CGCGATGGAT
CATCCCGAGC TCTATCCGCA GCTCACCATC CGGGTCTCCG GCTACGCGGT GAACTTCACC
AAACTGACGC GCGAGCAGCA GCTCGACGTC ATCTCTCGGA CCTTCCATAG TGTACACTGA
|
|---|
| Protein sequence | MNIQVQNPIG EAFDAIPSDP WRDFETGNWT REIDVRDFIQ KNVTPWVGDA SFLVPATART
QALWAKLKDL LQLERDHGGV LDVDSKTFSS IVAHGAGYID RELEQIVGLQ TDAPLKRAIM
PFGGWRMVKN GLEAYGLKAD PSFEKIFPGI RKTHNDAVFD VYSPDAVKCR KSGIITGLPD
AYGRGRIIGD YRRVALYGVA RLIEDKKAQA ASLELDSLDD AVLRQREEIA EQIRALKELV
VMAKAYGFDL AKPALNAREA IQWTYFAYLA AVKESNGAAM SLGRVSNFID IYVERDIAEG
VLDEATAQEL VDHFVMKLRI VRFLRTPEYD ALFSGDPTWV TESIGGMGLD GRALVTKSSF
RFLHTLETLG PAPEPNLTVL WSDYLPQGFK DYCALTSIRT SSIQYENDDL MRAYWGDDYG
IACCVSAMRI GKQMQFFGAR ANLAKTMLYA INGGRDELSG EQIGPTLSPV TGDVLDYDDV
KAKLGPMMDW LAKTYIGALN AIHYCHDKYM YERIEMALHD RDILRTMACG IAGLSVAADS
LSAIKHAKVK VIRDARGLAT DFAIEGEYPA FGNNDDRVDE IAIWLVKEFM ERLRKQKTYR
NSVATMSVLT ITSNVVYGKK TGNTPDGRKA GEPFAPGANP MHRRDVKGAV ASMASVAKLP
YAHSQDGISY TFTIVPSALG AGEADRVDNL TGLLDGYFAQ GGHHINVNVF DRETLLHAMD
HPELYPQLTI RVSGYAVNFT KLTREQQLDV ISRTFHSVH
|
|---|
| |