| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1045 |
|---|
| Symbol | |
|---|
| ID | 3969655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1146532 |
|---|
| End bp | 1147968 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637924156 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_530928 |
|---|
| Protein GI | 90422558 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAC TCACGGCCGC AGCGCCGTAC GTCATTCGGC GCCCACAAGA CGTTGTCGAT
ATCGTCAACG CCCACCCGGC GACCCGTTCC GGTCTCGCCG TCACGCTGAT CGCGCTGGGC
GGCGTCCTGA TCGATGCCTA CCAGGCCGCG ATGATCGGCT TCGGCAATTC GTTCATCGCC
ACGCAGTTCG GCATTTCGCC GGGGCTTGCG GCGACGGTGA ACGCCTCGGT TCTGGTCTCG
GCGCTGATCG GCGGCTTGTT GTCGAACCGG ATCATCAATC GCTTCGGCCA GCGCGGCGGC
TTCCTGATCG GCATGGGGCT TTGCACGGTC GGAGCCTTCG CGATCGCTTT CGCTCCAAAT
ATCTGGGCTG TGCTGGTGAG TCGGTTGGTG ATGGGATTAG GTCTCGGCAT CGATTTCCCG
CTGGCAACCG GCGCGGTCGC CGAATTGCGC GGCTCGTCCT CGAAGAAGTC CGGCACGTCC
GTCAATCTTT GGCAGATGGG ATGGTACCTT TCGACCACGG TGGTCTATCT CATCTTGCTG
TCGCTCTCGG CGGCGGCGGT CGAGCAGCCG ATGCTGTGGC GTTACGGCAT TTTCATCGGC
TCCGCCTTCG CCGTGGTCGT CATGGTGCTG CGCTATATCT ACATCGGGGA GTCGGCGATG
TGGGCGGCGC GCACCTATCG CTACGACGAG TCCTGCAAAA TCCTCAGCGA TCGTTATGAC
GTCCGGGCCG AAGTGGCCGG GGACGCCACC CACGAGAAGG AGGCAGGGGC CAAGCTGCAC
GGTGCCTACT CTGTGCTGTT CCGTGCGCCC TATCGTAGAC GGACCATTCT CGGCTGTGTG
GTCGCCACGA TGCAGGCCTG GCAATACAAT GCGGTCGGCG TCTATCTCCC CTTGACGCTT
GCGGGCATTC TCTCCGGCGG GCTGTCGAAC GCGCTGTGGG GCTCGGCCGC CGTCAATGCG
CTATGCGGCG TCACCGGCGG GGCGATCGGT TCGATCCTGG TGCAGAAGAT CGGGGCGCGT
CGGCAGTCGA TGTTCGGCTT CGGCATGGTG GTGCTGGCGC TGCTGATGCT GGGCTTCATG
GGCAAGGATA GCCCGTGGCT GGCGCTGGTG TTGCTCGGGC TGATCATCTT CTTTCATTCG
GCCGGTCCCG GCGGTCTCGG CATGACCATC GCGACCTTGT CGTACCCGCC GAGCATTCGC
ACGGCGGGCG TCGGTTTTGC GCGCGCGATC ATGCGCGCCG GCGCCCTTTG CGGGCTGATC
TTCTGGCCGA TCCTTTGGCA GAACCTGCGC ACCGACGCTT TCTACTGGCT GGCAATCGTG
CCGCTGGTCG GATTTCTGAC CTGTCTTGCG ATCCGCTGGG AGCCGATCGG CGCCAACGTC
GACGCCGAAG ACGCTTCGGT GCTCTCTATC GTTGCAGTGA AGGAGAATGC GGCATGA
|
|---|
| Protein sequence | MNTLTAAAPY VIRRPQDVVD IVNAHPATRS GLAVTLIALG GVLIDAYQAA MIGFGNSFIA
TQFGISPGLA ATVNASVLVS ALIGGLLSNR IINRFGQRGG FLIGMGLCTV GAFAIAFAPN
IWAVLVSRLV MGLGLGIDFP LATGAVAELR GSSSKKSGTS VNLWQMGWYL STTVVYLILL
SLSAAAVEQP MLWRYGIFIG SAFAVVVMVL RYIYIGESAM WAARTYRYDE SCKILSDRYD
VRAEVAGDAT HEKEAGAKLH GAYSVLFRAP YRRRTILGCV VATMQAWQYN AVGVYLPLTL
AGILSGGLSN ALWGSAAVNA LCGVTGGAIG SILVQKIGAR RQSMFGFGMV VLALLMLGFM
GKDSPWLALV LLGLIIFFHS AGPGGLGMTI ATLSYPPSIR TAGVGFARAI MRAGALCGLI
FWPILWQNLR TDAFYWLAIV PLVGFLTCLA IRWEPIGANV DAEDASVLSI VAVKENAA
|
|---|
| |