Gene RPC_1017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1017 
Symbol 
ID3969666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1117473 
End bp1118651 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content62% 
IMG OID637924130 
Producttwin-arginine translocation pathway signal 
Protein accessionYP_530902 
Protein GI90422532 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAACC GACGTCGTTT GTTATCTATT GGAGCGTCCG CTGGCGCCGC CTTGGCGTGC 
GGTCCGTTCA TTCGGTCGTC CTACGCGCAA TCGGGGCCGA TCAAGATCGG GCTGTTGCTG
CCCTATAGCG GCACTTATGC CCCGTTGGGC GAAGCGATCA CCCGTGGCCT CGAGCTCTAC
GTCGGGGCGC AGGGCGGGAA ACTCGCCGGA CGAAGCGTCT CGTTCGTCAA GGTCGATGAT
GAGTCCGCGC CGCCCAAGGC GACCGAGTTG ACGACCAAGC TGATCCAGGG CGAGAAGGCG
GACATTCTGA TGGGCACCGT GCATTCGGGC GTTGCGATGG CGATGGTCAA GATCGCGCGC
GAAGACGGCA TACCGACCAT TGTGCCCAAT GCCGGTGCGG ACATCATCAC CCGCGCGATG
TGCGCAGAGA ACGTGTTCCG GACCTCGTTC GCCAATGGCC AGATCGGTCG CGCTACCGGC
GATGCCATGC TCAAGGCGGG ACACAAGAAG GCGGTGACGG TCACCTGGAA ATACGCCGCG
GGTGAAGAAA TGGTCAGCGG CTTCAAGAAA TCCTTCAGCG CCGGAAAAGG CGAAATTCTA
AAGGACATCA CCATCGCATT CCCCGACGTC GAGTTTCAGT CGGCGCTGGC CGAAGTCGCG
TCGCTGAAGC CCGATTGCGT CTATGCGTTC TTCTCCGGCG GCGGCGCACT CAAGTTCATC
AAGGACTACG CCGCGGCAAG ACTCGGCATT CCGCTTTGGG GACCCGGCTT CCTGACGGAC
GGCGTTGAAG CCGCCGCGGG TCCGGCCGGC GACGGCATCA AGACGGTGCT GCACTATGCC
GGCGATCTCG ACAACGCGGA GAATCTGGCC TTCGTTAAGT CATTCGAGGC AGCCTACAAA
AGCCCACCGG ATGTGTTCGC AGTCCAGGGG TGGGATGCGG CGCAATTGCT CAATATCGGT
CTGAAGGCCG TCAGCGGCGA TGTCTCCAAA CGCAAGGAAT TGAACGCCAC CATGGCGGCG
GCATCGTTCA ACAGTCCGCG CGGGCCTTTC AAGCTGTCCG CAGCGCACAA TCCCGTGCAG
AACTTTTACC TGCGCGAACT GAAGGGCGGC AAGAACACCC ATCTCGGCCT GGCCGCCCCT
GCGGTGGCCG ACGAAGCCAA TGGCTGCAAG CTGGCCTGA
 
Protein sequence
MINRRRLLSI GASAGAALAC GPFIRSSYAQ SGPIKIGLLL PYSGTYAPLG EAITRGLELY 
VGAQGGKLAG RSVSFVKVDD ESAPPKATEL TTKLIQGEKA DILMGTVHSG VAMAMVKIAR
EDGIPTIVPN AGADIITRAM CAENVFRTSF ANGQIGRATG DAMLKAGHKK AVTVTWKYAA
GEEMVSGFKK SFSAGKGEIL KDITIAFPDV EFQSALAEVA SLKPDCVYAF FSGGGALKFI
KDYAAARLGI PLWGPGFLTD GVEAAAGPAG DGIKTVLHYA GDLDNAENLA FVKSFEAAYK
SPPDVFAVQG WDAAQLLNIG LKAVSGDVSK RKELNATMAA ASFNSPRGPF KLSAAHNPVQ
NFYLRELKGG KNTHLGLAAP AVADEANGCK LA