| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1016 |
|---|
| Symbol | |
|---|
| ID | 3969665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1115760 |
|---|
| End bp | 1117325 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637924129 |
|---|
| Product | benzoate-CoA ligase family |
|---|
| Protein accession | YP_530901 |
|---|
| Protein GI | 90422531 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR02262] benzoate-CoA ligase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTAC GTGACTACAA TGCGGCGGTC GATTTTGTGG ATCGCAATGT CGCGGAAGGT
CGAGGCGATA AGACCGCCTT CATCGATCCG TCGCGTAGGA TATGCTATGA CGAGCTAAGC
GACGCGGCGG CCAGGGTCGG CCCGATGTTG GCGCGGCTTG GCATCGAGCA GGAAAGCCGT
ATCGCGCTGA TTCTGCAGGA CATCGTTGAG TTTCCCATTC TGTTCTGGGG GGCGATCCGT
GCCGGTATCG TTCCGGTGCT GCTCAACACC CGGCTGACAG CCGATCAGTA CCGTTACCTT
CTGGAGGATT CTCGGTCAAA GGCGGTCTTC GTATCGACCA ACCTGCTGCC GTTGATCGAG
GAAGCCGCGG CCGATCTCCC CCACCTCCGG TCGATCATTG CGGTCGGCGA CGAACCGTCG
TCGGCGCTAA ATTTGAGGGA TATTCTCGCG GCGGAAAACG AGGGCGGAGC GCCGGCCAGC
ACCTGTGCCG ATGATGTTGC ATATTGGCAG TATTCGTCGG GCACAACAGG CATGCCCAAG
GGCGTCATGC ACGTTCACTC CAGCCCACGT TTCATGGCCC AGAGTGCCGG CCAGCGTCGA
ATTGGCTATC GCGAGGATGA CGTCGTCTTC TCGGCGGCAA AGCTGTTCTT CGCCTACGGT
CTTGGGAACG CGATGTTTTG CTCGATGTGG GTTGGGGCGA CATCGGTGCT TTACCCGGAG
CGGCCGACTG CCGAATCCGT GTTTCACGTA TTGCAGGTTC ACCAGCCGAC CCTGTTGTTC
GCCGTGCCGA CTCTGTATGC CGCGATTCTT GCTGATCAGA ATAGCAAGGA CGAGCGACTG
CCGGAGCGAC TTCGCCTGTG CGTTTCCGCC GGCGAGCCGC TGCCCGCACA GGTCGGATTG
AATTGGCGAA GCCGTTTTGG GCGGGACATC GTCAATGGCG TCGGCTCGAC CGAGATGGGG
CATCTGTTCC TGACCAATCT TCCGAACGCG GTGGAATACG GGACGTCGGG ATTTCCGGTG
GAGGGATATC GTCTGAAGCT GGTAGACGAA CAGGGGCGCG ACATCGCCGA CGACGCGATC
GGCGAGTTGC TGGTGAACGG CGGATCCGCC GCCGCGGGCT ACTGGAATCA GCGTGACAAG
TCGCGGACGA CCTTCATAGG CGAATGGACA CGAACGGGGG ACAAGTATCA CCGCCGTGCC
GATGGCGTGT ACACCTACCG CGGCCGCAGC GACGATATGT TCAAGGTCAG CGGCATATGG
GTGTCGCCCT TCGAAATCGA AGAAGCGCTG ATGAGCCATG CCAAGATCGC CGAGGCGGCG
GTGATACCGG CAGAAGATCT GGATGGACTG ATCAAGCCGA AGGCCTTCGT CGTGCTCGCC
TCGCGGGAAG AAAACATCAG TGTGTTGTTC GATGAGCTCA AGGAACACGT CAAGCGTTCG
ATCGGCCCCT GGAAGTACCC GCGTTGGATA AGAGTCGTAG ATGAACTTCC GAAGACGTCG
AGCGGCAAGC TGCAACGTTA TATGTTGCGT GAGATGGTGG TGGACCAGAA CGGTTCAGCA
CATTGA
|
|---|
| Protein sequence | MPLRDYNAAV DFVDRNVAEG RGDKTAFIDP SRRICYDELS DAAARVGPML ARLGIEQESR
IALILQDIVE FPILFWGAIR AGIVPVLLNT RLTADQYRYL LEDSRSKAVF VSTNLLPLIE
EAAADLPHLR SIIAVGDEPS SALNLRDILA AENEGGAPAS TCADDVAYWQ YSSGTTGMPK
GVMHVHSSPR FMAQSAGQRR IGYREDDVVF SAAKLFFAYG LGNAMFCSMW VGATSVLYPE
RPTAESVFHV LQVHQPTLLF AVPTLYAAIL ADQNSKDERL PERLRLCVSA GEPLPAQVGL
NWRSRFGRDI VNGVGSTEMG HLFLTNLPNA VEYGTSGFPV EGYRLKLVDE QGRDIADDAI
GELLVNGGSA AAGYWNQRDK SRTTFIGEWT RTGDKYHRRA DGVYTYRGRS DDMFKVSGIW
VSPFEIEEAL MSHAKIAEAA VIPAEDLDGL IKPKAFVVLA SREENISVLF DELKEHVKRS
IGPWKYPRWI RVVDELPKTS SGKLQRYMLR EMVVDQNGSA H
|
|---|
| |