Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0994 |
Symbol | |
ID | 3969681 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 1087177 |
End bp | 1090281 |
Gene Length | 3105 bp |
Protein Length | 1034 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637924111 |
Product | conjugal transfer relaxase TraA |
Protein accession | YP_530883 |
Protein GI | 90422513 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.112891 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000169955 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | TTGAGACGGC GTAGTCCCTC CCGAGATTTT TTCGAGGGAG GGCGCGCTTA TACGTCGTTC CGACGTGCGC TTCGCCGTGG CAATGATCTG ATCGCGATGG CGATCTATCA TCTTCACGTC AAGGTCATTG GCCGCAAATC CGGCTCCAGC GCGGTGGCCT CCGCCGCCTA CCGCTCGGCG TCGCGGCTGC GCGACGACCG GCTTGAGCGT AGCTACGACT TTTCGGCCAA GCGCGGCGTC GTCCATTCCG AGGTCATGCT GCCGGAGAAT GCGCCGCAGG CATGGCGCGA CCGCGAACGG TTGTGGAACG ATGTCGAATC CTTCGAGGTC CGCAAGGACG CGCAGCTCGC CCGCGAGGTC GAATTCGCCC TTCCGCGCGA GCTGACGCAG CGCCAAGGCA TCGAACTGGC CCACGACTTC GTGCAGTCCG AATTCGTTGA CCAAGGCATG ATTGCCGACG TCAATGTGCA TTGGGACATG GCCGAGGACG GCATGCCCAA ACCCCACGCC CATGTCATGC TGACCATGCG TGCGGTGAAC GAAAACGGCT TCGGCCCAAA GATACGAGAC TGGAACCGCA CCGAGATGGT CGAGCGCTGG CGGGAACGCT GGGCCGAGAT CGCCAATCAG CGGCTGGCCG AACTCGACAT CGACGCCCGG ATCGACCATC GAAGCCTTGA AGCACAGGGC ATCGGGCTGG AGCCGCAAAG CCAGATCGGC GCGACGGCGC AGCGGATCGA AAGCCAAGGG ATCGAGGGGC GAGGGATCGA GGCCGCCACC AATGTCGCTG ATCGGGCCGA GATGCACCGC CAGATTGCGC GGGGCAACGG CGCAAGAATT ATCGCCGATC CTTCCATCGC GCTGGACGCC ATCACGCAGC AGCAATCGAC CTTCACGCAG CGCGACATGG CGAAGTTCGC GCACCGGCAC AGCGACGGCA TCGACCAGTT CAACCAGGTC ATAGGGACGA TGCGGGGCGC GCCCGATCTG GTCGAACTGG GCAAGGACGG ACGGGGTGAG GACCGCTTCA CCACCCGCGA CATGATCGAG ACCGAACAGC GCCTGCACCG CGCCACCGAG CTGATGGCGG AGCGGGATCG TCATGAGGTG CAGGACGCTG ACAGGTTGGC GGCGCGGGCG CGGGCGGAAG CGCGCGGTCT GATGCTTTCG GCGGAGCAGG CCGACGCCTT GGCGCAGGTC ACGAACGGTC GCGATCTCGG CGTCGTGGTC GGCCATGCCG GAACGGGAAA GAGCGCGATG CTGGGCGTGG CGCGGGAGGC TTGGGAAGCA GCAGGTTACG AGGTTCGGGG CGTGGCGTTG TCCGGCATCG CCGCTGAGAA TCTGGCAAGC GGATCGGGCA TCGCGTCGCG CACCATCGCC AGCCTGGAAC ATGGCTGGGC GCAGGGTCGC GACCTGCTCA GCGCGCGCGA TGTGTTGGTG ATCGACGAGG CCGGCATGGT CGGCACGCGC CAGTTGGAGC GCGTGCTGTC CCATGCTGCC GAGGCCGGCG CCAAGGTGGT GCTGGTCGGC GATCCGCAGC AGTTGCAAGC AATAGAAGCG GGCGCGGCGT TTCGGTCGAT CTTTGACCGC CACGGCGGCG CGGAGATCGG CGAGGTGCGC CGCCAGCGGC AGGACTGGCA GCGCGACGCC ACGCGCGATC TCGCCAACGG CAAAATCGGC CACGCGCTTG ATGCCTATCG CTCCCACGGC ATGGTCCATG CTGCCCCGAC ACGAGAGGAC GCGCGCAAAA ATCTGATCGA CCGCTGGGAC CGCGACCGGC AGGCATCGCC GGACCGCAGC CGCATCATCC TCACCCACAC CAATGACGAG GTTCATGCGC TCAACGCCGC CGCGCGGGAA CGGATGCGGG CGGCCGGCGA TCTCGGCGAG GATGTGCGTG TCACGGTCGA ACGCGGCGCT CGCAGCTTCG CCACCGGAGA TCGCGTCATG TTCCTGCAAA ACGAGCGCGG GCTTGGCGTG AAGAACGGCA CGCTCGGCGC CATCGAGCAT GTCAGTCAGC AATCCATGTC CGTGTGCATC GACGATGGCC GTTCCGTTGA ATTCGACCTG AAGGATTACA ACCGCATCGA CCATGGCTAT GCCGCGACCA TCCACAAGGC GCAGGGCATG ACGGTGGACC GCACCCATGT GCTGGCGACG CCGGGCCTGG ACGCCCACGC CAGCTATGTC GCTCTTTCCC GGCACCGTGA CGGCATGGAG CTGCATTACG GCCGTGACGA CTTCACCAGC CAGGACCGGC TCACCCGCAC CCTGTCGCGC GATCGGGCCA AGGACATGGC GTCGGACTAC GATCGGGTTG ACCCGGTGCA AAACTATGCC GAGCGGCGCG GCATCACCTT CCGCGCCCGT GTCGCCGAGA TCGTGCGCAA GATCGTGCCC GAGAGGGTGC GCGGCATGTT CGATGGCCTC CGCCCACCGA CGGTCCCCGC ACCGGAAGCC AGGTCGGAGC CGGAAAGGGA AAGCGCCGCG GCGGCGGTCC GGCGAACGAC GGACGATGCG CCGGGAAGGA CCGTGGCAGC GGACAGCGAC GCGGCGCTGC GCCAAGCTCG CACCAAGGCG CTCATCCGCC ACGCCCGCGC CGTGGATATG ATCTTCGAGA TGCAGCAGCA GGGCGGCAAG GCCAGCCCGG AGCAGGTGAA GGAATTGCAG GAGGCCCGCA AGGAGTTCGA GGAGGTACGG CCCTATGGTT CGCACGACGC CGAAGCCGCC TACAAGACGA ACCCGGAACT CGCAGAGCAA GCCGCTTCGG GCAATCCCGC CCGCGCGATC CGCGCCCTCC AACTCGAAAC CGAGCTGCGC ACCGCCCCAG CCCGGCGCGC CGACCGCTTC GTGGAACGTT GGCACAAGCT CGACCAAACC AGCCAGCGTC AGTATCAGGC CGGCGACATG TCCGGTTACA AGACCACGCG GGCAAGCATG GGCGTCATGG CGAAAAGCCT GGAGCGCGAT CCGCAGCTAG AATCCATCCT CGCCAACCGC AGGGCCGAAC TCGGCATCCA GATGGAAAGT GGACGCCGGC TCAGCGCGGC CCTTGCCTTT GCGCACGGTA TCGACATCGG CAGAGGCCGG GGGATCGGAA TCTGA
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Protein sequence | MRRRSPSRDF FEGGRAYTSF RRALRRGNDL IAMAIYHLHV KVIGRKSGSS AVASAAYRSA SRLRDDRLER SYDFSAKRGV VHSEVMLPEN APQAWRDRER LWNDVESFEV RKDAQLAREV EFALPRELTQ RQGIELAHDF VQSEFVDQGM IADVNVHWDM AEDGMPKPHA HVMLTMRAVN ENGFGPKIRD WNRTEMVERW RERWAEIANQ RLAELDIDAR IDHRSLEAQG IGLEPQSQIG ATAQRIESQG IEGRGIEAAT NVADRAEMHR QIARGNGARI IADPSIALDA ITQQQSTFTQ RDMAKFAHRH SDGIDQFNQV IGTMRGAPDL VELGKDGRGE DRFTTRDMIE TEQRLHRATE LMAERDRHEV QDADRLAARA RAEARGLMLS AEQADALAQV TNGRDLGVVV GHAGTGKSAM LGVAREAWEA AGYEVRGVAL SGIAAENLAS GSGIASRTIA SLEHGWAQGR DLLSARDVLV IDEAGMVGTR QLERVLSHAA EAGAKVVLVG DPQQLQAIEA GAAFRSIFDR HGGAEIGEVR RQRQDWQRDA TRDLANGKIG HALDAYRSHG MVHAAPTRED ARKNLIDRWD RDRQASPDRS RIILTHTNDE VHALNAAARE RMRAAGDLGE DVRVTVERGA RSFATGDRVM FLQNERGLGV KNGTLGAIEH VSQQSMSVCI DDGRSVEFDL KDYNRIDHGY AATIHKAQGM TVDRTHVLAT PGLDAHASYV ALSRHRDGME LHYGRDDFTS QDRLTRTLSR DRAKDMASDY DRVDPVQNYA ERRGITFRAR VAEIVRKIVP ERVRGMFDGL RPPTVPAPEA RSEPERESAA AAVRRTTDDA PGRTVAADSD AALRQARTKA LIRHARAVDM IFEMQQQGGK ASPEQVKELQ EARKEFEEVR PYGSHDAEAA YKTNPELAEQ AASGNPARAI RALQLETELR TAPARRADRF VERWHKLDQT SQRQYQAGDM SGYKTTRASM GVMAKSLERD PQLESILANR RAELGIQMES GRRLSAALAF AHGIDIGRGR GIGI
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