| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0954 |
|---|
| Symbol | |
|---|
| ID | 3969717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1048856 |
|---|
| End bp | 1049494 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637924070 |
|---|
| Product | periplasmic nitrate reductase c-type cytochrome, NapC/NirT |
|---|
| Protein accession | YP_530843 |
|---|
| Protein GI | 90422473 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
|---|
| TIGRFAM ID | [TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.448088 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCGA TCGACCCTTC GGCGCCGCGC CGCTCATGGC TGGCGCGGGC CTGGCAGTTT
CTGAAAGATC TGTGGCAGGT GCTGCTGCGG CCGAGTTCGG TGTTCGGGCT CGGCGTGCTG
GTGCTGGCGG GATTCGTCGC CGGCATCGTG TTCTGGGGCG GCTTCAACAC CGTGCTGGAA
GCCACCAACA CCGAGAAATT CTGCACCGGC TGCCACGAGA TGCGCGACAA CGTATTCGCC
GAATTGAAGC CGACCATCCA CTTCTCGAAC CGCTCCGGCG TCCGCGCCAG CTGCCCGGAT
TGCCACGTGC CGCACAATTG GACCGACAAG ATCGCCCGCA AGATGCAGGC CTCGAAAGAG
GTCTGGGGCC ATCTGTTCGG CTCGATCGAC ACCCCGGACA AATTCCGCGA GAACCGGCTG
GAGCTGGCGA TGCACGAATG GTCGCGCTTC AAGGCCAATG ATTCGCTGGA ATGCCGTAAC
TGCCATAGCG CAGCCTCGAT GGACATCACC AAGCAGTCGC CGCGCGCTTC GGTGGCGCAT
CAGCGCTATC TGTTCACCGG GGAAAAGACC TGCATCGATT GCCATAAGGG CATCGCCCAC
CATCTGCCCG ACATGCGCGG GGTGCCCGGC TGGCAATAA
|
|---|
| Protein sequence | MTAIDPSAPR RSWLARAWQF LKDLWQVLLR PSSVFGLGVL VLAGFVAGIV FWGGFNTVLE
ATNTEKFCTG CHEMRDNVFA ELKPTIHFSN RSGVRASCPD CHVPHNWTDK IARKMQASKE
VWGHLFGSID TPDKFRENRL ELAMHEWSRF KANDSLECRN CHSAASMDIT KQSPRASVAH
QRYLFTGEKT CIDCHKGIAH HLPDMRGVPG WQ
|
|---|
| |