| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0891 |
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| Symbol | |
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| ID | 3969810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 985316 |
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| End bp | 986662 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637924007 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_530780 |
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| Protein GI | 90422410 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.669112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCA CCACCGCTCC CGGGCTGATC GGCCGCAGCA CGCAAGCCAT CACGCCCGGC
TATATGTCGG GCTTCGGCAA TTCGTTCGAG ACCGAGGCGC TGCCCGGCGC GCTGCCGATC
GGGCGCAACT CGCCGCAGCG CGCGCCCTAC GGGCTTTACG CCGAGCAATT GTCGGGCTCG
CCGTTCACCG CGCCGCGCGG CTCTAACGAG CGCTCCTGGC TGTATCGCAT CCGCCCCTCG
GTGCAGCACT CCGGCCGCTT CGAGAAAGCC GAGGCCGGGC TGTGGCGCTC CGCACCCTGC
CATGAGCACG ACATGCCGAT CGCGCAATTG CGCTGGGACC CGCCGCCGCT GCCGCAGCGC
GCGCAGACCT TTCTGCAGGG CGTCGAGACC ATGACCACGG CGGGCGACGT CAATACGCAA
GCCGGCATGG CGGCGCATAT GTATTTGATC AGCGCCTCGA TGGTGAACCA GCATTTCTAC
AATGCCGACG GCGAATTGAT GTTCGTGCCG CAGCAGGGTG GCTTGCGCCT CGTCACCGAA
TTCGGCGTGA TCGGCGTCGC GCCCGGCGAG ATCGCGGTGA TTCCGCGCGG CGTCAAGTTT
CGCGTCGAGC TGATCGACGG GCCGGCGCGC GGCTATCTGT GCGAGAATTA CGGCGGCGGC
TTCACGCTGC CGGAGCGCGG CCCGATCGGG GCCAATTGCC TTGCGAACGC ACGCGACTTC
CTCACGCCGG TCGCGGCTTA TGAAGATAGC GACACGCCGA CCGAGCTCTA CGTCAAATGG
GGCGGCGCGC TGTGGGTGAC GCAGTTGCCG CATTCGCCGA TCGACGTGGT GGCCTGGCAC
GGCAACTACG CGCCGTACAA ATATGATCTG CGCACCTTCT CGCCGGTCGG CGCGATCGGC
TTCGATCATC CCGATCCGTC GATCTTCACC GTGCTGACCT CGCCCTCGGA GACCGCCGGC
ACCGCCAATA TCGACTTCGT GATCTTCCCG GAGCGCTGGA TGGTGGCGGA GAACACCTTC
CGCCCGCCGT GGTATCACAT GAACATCATG TCGGAATTCA TGGGGCTGAT TTATGGCGTG
TACGACGCCA AGCCGCAGGG CTTTCTGCCC GGCGGCGCCT CGCTGCACAA CATGATGCTG
CCGCACGGTC CGGACCGCGA GGCGTTCGAT CACGCGTCGA ACGCCGAGCT GAAGCCGGTG
AAGCTCGAAG GCACCTTGGC CTTCATGTTC GAGACCCGCT ATCCGCAGCG CGTCACCGTG
CACGCCGCGA CTTCCAGCAC GCTGCAGGCC GACTACGCTG AGTGCTGGCG CGGGTTGCAA
AAGCGCTTCG ATCCGACCAA ACCCTGA
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| Protein sequence | MNITTAPGLI GRSTQAITPG YMSGFGNSFE TEALPGALPI GRNSPQRAPY GLYAEQLSGS
PFTAPRGSNE RSWLYRIRPS VQHSGRFEKA EAGLWRSAPC HEHDMPIAQL RWDPPPLPQR
AQTFLQGVET MTTAGDVNTQ AGMAAHMYLI SASMVNQHFY NADGELMFVP QQGGLRLVTE
FGVIGVAPGE IAVIPRGVKF RVELIDGPAR GYLCENYGGG FTLPERGPIG ANCLANARDF
LTPVAAYEDS DTPTELYVKW GGALWVTQLP HSPIDVVAWH GNYAPYKYDL RTFSPVGAIG
FDHPDPSIFT VLTSPSETAG TANIDFVIFP ERWMVAENTF RPPWYHMNIM SEFMGLIYGV
YDAKPQGFLP GGASLHNMML PHGPDREAFD HASNAELKPV KLEGTLAFMF ETRYPQRVTV
HAATSSTLQA DYAECWRGLQ KRFDPTKP
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