| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0888 |
|---|
| Symbol | |
|---|
| ID | 3969807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 982277 |
|---|
| End bp | 983884 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637924004 |
|---|
| Product | FAD-dependent oxidoreductase |
|---|
| Protein accession | YP_530777 |
|---|
| Protein GI | 90422407 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0885397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGG GCCAAGCCGC GTTCGGGTAT CGCCGCCATT GCGACCAGGA TCGGCGCGAT
CCGGCGCGGC ACCGCGTCGT GGTGGTGGGC GCCGGACCGG TGGGATTGTC GCTGTCGATC
GATCTGGCGC AGCGCGGCCA CTCGGTGGTG CTGCTCGACG ACGCCGACCG GATCGGCGAC
GGCTCGCGCG CGATCTGCTT TTCCAAACGT TCTCTGGAGC TCTGGGACCG GCTCGGCGTC
GCCGACCGTA TGCTCGCCAA GGGCGTGATC TGGCAGGTCG GCAAGATCTT TTTGCGCGAC
GCCATGGTGT ATCGGTTCGA TCTGTTGCCG GAACAAGGCC ACAAGATGCC GGCCTTCATC
AATCTGCAGC AATACTACGC CGAGGCGTTC CTGGTCGATC GGGTGCAGCA ATTGCCGCAG
GTCGACCTGC GCTGGCGCAA CAAGGTGATC GGGCTTGCGC AGCACAATGA CCACGCGGTG
CTGACCGTCG CCACGCCTGA GGGCGAATAC CGGCTTGCCG CGGACTACGT GGTGGCCTGC
GACGGCGCGC GCTCGGCGCT GCGCGGGATG GTCGGCGCCG AATTCCAAGG CGAGGTGTTC
GAGGATCAGT TCCTGATCGC CGACGTCAAG ATGCAGGCCG AGTTTCCCAC CGAGCGCTGG
TTCTGGTTCG ACCCGCCGTT CCATTCCGGG CAATCGGCGC TGCTGCATCG CCAGCCGGAC
AATGTCTGGC GGATCGATCT GCAGATCGGC GCCGACGCCG ATGCGGCGGT GGAACGGCTG
CCGGAGAACG TCCGGCCGCG GATCGAGCGG ATGCTCGGCC ACGGCGACTT TTCGTTCGAA
TGGATCTCGA TCTACAAGTT CCAGTGCCGG CGGATGCAGC GGTTGGTGCA CAGCCGGGTG
GTGTTCGCCG GCGACTCGGC GCATCAGGTG TCGCCGTTCG GCGCCCGCGG CGCCAATTCC
GGATTGGAGG ACGGCGAGAA TCTGGCGTGG AAGCTCGACC TGGTGCTGCG CAGGACGGCC
GGCGCAGCGC TGCTTTCGAG CTACGAGATC GAGCGCGGCC AGGCCGCCGA CGACAATATC
CGCGCCTCCA CCCGCTCGAC CGATTTCATC GCGCCGCATT CCAAACAGGA ACGCCGGCTA
CGCGGCGCGG TGCTGGCGTT GGCCAAGCAG GCGGATTTCG CCAAGCGCAT GGTCAATGCC
GGGCGGCTGT CGCTGCCGTC GGTCTATGAC ACGCCGTTGT CGACGCCGGA TGGCGAGATT
TGGGCGGGCG GGCCAAAGCC CGGCGCGCAG ATGATCGACG CGCCGCTGGC GCGGGGCGAC
GGCGGGCGCT GCTATCTCGG CGACGCATTC GTAGCCGCCG GGCGCGGCTT CACGCTGCTG
CACGCCGCCG ATGGCACGAC GTTGCCGGTG CCGGACGGCG TCGGCGAGAT CCGGATCGGA
GCGGACGCGG GTTTGCGCGA TCAAGCCGGG CTGTTCGCGC AGCGTTACGA CGCGAGCCCG
GGCGCGGCCT ATCTGCTTCG CCCCGACGGC TACGTCGCCG CGCGGTTCAA GCAGCCGACG
CCCGCCGCGC TCGACGCGGC GCTGGCGCGG GCGAGGGGAA TGGTGTGA
|
|---|
| Protein sequence | MPPGQAAFGY RRHCDQDRRD PARHRVVVVG AGPVGLSLSI DLAQRGHSVV LLDDADRIGD
GSRAICFSKR SLELWDRLGV ADRMLAKGVI WQVGKIFLRD AMVYRFDLLP EQGHKMPAFI
NLQQYYAEAF LVDRVQQLPQ VDLRWRNKVI GLAQHNDHAV LTVATPEGEY RLAADYVVAC
DGARSALRGM VGAEFQGEVF EDQFLIADVK MQAEFPTERW FWFDPPFHSG QSALLHRQPD
NVWRIDLQIG ADADAAVERL PENVRPRIER MLGHGDFSFE WISIYKFQCR RMQRLVHSRV
VFAGDSAHQV SPFGARGANS GLEDGENLAW KLDLVLRRTA GAALLSSYEI ERGQAADDNI
RASTRSTDFI APHSKQERRL RGAVLALAKQ ADFAKRMVNA GRLSLPSVYD TPLSTPDGEI
WAGGPKPGAQ MIDAPLARGD GGRCYLGDAF VAAGRGFTLL HAADGTTLPV PDGVGEIRIG
ADAGLRDQAG LFAQRYDASP GAAYLLRPDG YVAARFKQPT PAALDAALAR ARGMV
|
|---|
| |