Gene RPC_0828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_0828 
Symbol 
ID3969863 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp911058 
End bp912899 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content66% 
IMG OID637923944 
Productsensory histidine kinase AtoS 
Protein accessionYP_530717 
Protein GI90422347 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.167481 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCGCGCG GGCTGCCCGG CCTGCCGCAC TCGCTGCGCG GCAAGCTTTT GCTGCTCTCG 
CTGATCGTGG TGTCGGTGCC GATCATGACG GCGGGGTACT TCCTCGATCG TCAGGGACAA
CAGACGCTTC TGCAGGAGAA GGAGGAGCGG CTGTTCGGTC TTGACCGTTT GCTCGATGCG
CAGCTCGGCA GCGGCTTCGA CGCGCTGCTG GCGGATTACG ACGGCGATAG GGCGGATGGC
GCTGCCATGG TGCGCCATCT CAATGCCCGC CTCGCCACCG TGACCGACCA GATGGCCGCG
GCCAATCCCG GGGTCGGCGT GGGATATTAT GACCTGGAGC GCAACGCGAT CGTCACCTAT
GGTCCGAGCG CGCAATACGG CGCCACGGTC GGCCGTCCGA TCCCGCCCGA CCATCCCGGC
TGGGCGGTGA TGCGAAGCGG CAAGCCCGCC ATGGAGGCCG GACCGCAGGT GCGCGGCCTC
ATCCTCAACG CGATGTGGCC GATCGTGCGC AACGACCGCG TGCAGGGTTA CGTCTGGGCC
AACCAGCTCT CCGACGACGT CGACCATCAA ACCGCGGCGA TGGATCGGGC GATCCTCGCC
GTCACCATCG CCGGCGTGGT ACTTGGCATT CTATTGACCC AGGCGATGTC GCGCGGTCTC
ACCCGCGATG TTCGCTTGGT GACCGACGGT CTCGCCCGAT TGCGCACCGA CCTGCACCAC
AGCATTCCGC CGCTGGCTGG TGAAATCGGC GAGATCGCCG CCAAGATCAA CGTCATGGCG
CAGTCTCTGC TGGACGCCAA ATCGCTCACT GAAGATATCG TGCAGAGCAT CGCCGACGGC
GTCATCGCCA TCGACCGCGA TGGCCGGATC ACCGCGATCA ACCCGGCGGC GCGGCACATG
GTCGGCGTCG CCGAGGCGGA GGCGATCGGC CGGCCCTATA ACTCGCTGTT CGATCCGGCG
GCGCCGTTTT CCAGCGTGCT GCTCGACACC CTCGAACACG GCTGCGAACA TGTCGATGTG
GCGGTGGAAA TGCCGCTGCC ACGGCAGATG CTGGACGTCA GCGCCAGCAG CAGTCTGCTG
CGCGACAGTC ACGGCACGGC GATCGGCGCC GTGGTGGTTC TGAAGGACCG AACCGAGCAG
AGCCGGCTGC GCACGCAGGT GATGCGCGCC GATCGGCTGG CTGCGCTAGG CGAACTGATG
GCGGGCGTGG CGCATGAAAT CCGCAATCCG TTGACCTCGA TCCGCGGCTT CGTCCAGTTC
CTCGAAGCCT GTGACGACGT CCGCGAATGG CGACGCTATT CGCCGGAGAT CATTCGCCAG
GTGGACAGCC TCAACCGCAT CATCACCGAG TTGCTCGAGT TTGGCCGTCC GCGTCCCCCC
GCGATCCGGC CGGTGCAGCT CAACGATCTG GTGCACGAAG TCACGCGCCT CGCCGGCCAT
AAGGCGAACG TCCAGTTGCG GCTTGCGCTG TGCGCGGAGC TGCCGCTGAT CGAGGCCGAC
GGCGAGGCGC TGAAACAGGC GCTGCTGAAC CTGCTGATCA ACGCGATGCA GGCGGTGGAG
ACTCTGGGCA CGGTGCGCAT CGAGACGCAT GTCGAGGCTG ACGGCGCCAC CGTCGCGGTC
GCCATCAGCG ACGACGGCGC CGGCATCCTG CCGGAAGACC TGGAGAAGAT CTTCGACCCG
TTCTTCTCGA CCAAGCCGCA GGGCACTGGA CTTGGCCTCG CCATGGTGCA TCGTATCGTC
GATGCCCATC ACGGGACGGT CGCCATGACC AGTCGCCCCG GCGCCGGAAC CGTCGCCACC
ATGCGTTTGC CGCGCCTGCA CATCAAGAAG GACGAGGTTT GA
 
Protein sequence
MPRGLPGLPH SLRGKLLLLS LIVVSVPIMT AGYFLDRQGQ QTLLQEKEER LFGLDRLLDA 
QLGSGFDALL ADYDGDRADG AAMVRHLNAR LATVTDQMAA ANPGVGVGYY DLERNAIVTY
GPSAQYGATV GRPIPPDHPG WAVMRSGKPA MEAGPQVRGL ILNAMWPIVR NDRVQGYVWA
NQLSDDVDHQ TAAMDRAILA VTIAGVVLGI LLTQAMSRGL TRDVRLVTDG LARLRTDLHH
SIPPLAGEIG EIAAKINVMA QSLLDAKSLT EDIVQSIADG VIAIDRDGRI TAINPAARHM
VGVAEAEAIG RPYNSLFDPA APFSSVLLDT LEHGCEHVDV AVEMPLPRQM LDVSASSSLL
RDSHGTAIGA VVVLKDRTEQ SRLRTQVMRA DRLAALGELM AGVAHEIRNP LTSIRGFVQF
LEACDDVREW RRYSPEIIRQ VDSLNRIITE LLEFGRPRPP AIRPVQLNDL VHEVTRLAGH
KANVQLRLAL CAELPLIEAD GEALKQALLN LLINAMQAVE TLGTVRIETH VEADGATVAV
AISDDGAGIL PEDLEKIFDP FFSTKPQGTG LGLAMVHRIV DAHHGTVAMT SRPGAGTVAT
MRLPRLHIKK DEV