| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0789 |
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| Symbol | |
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| ID | 3969919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 873358 |
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| End bp | 876234 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637923905 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_530679 |
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| Protein GI | 90422309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.651687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTCTGA TCAGGTGCCT CGCGCTCGCC GCGCTGGGCT TCATGATGAT TGCGGCCGGC
TCGCCGGCGA ACGCCCTCGA CGCGGTCAGC GTCCGCGGTG ACGCGCCCGC GATCGATCTC
ACCGCGGTGC TCGATCATCA GCGCAGCGAG GGCGACCGCA TTCAGGTTTC CACCGCGCCC
GGCACCGACG GCATCGTCCG CCGCATCGAG GTGCGCGCCC GCGAGGGCGG CCAGAACTGG
GTGGTGTTCG CGCTGGCGAA TAACACCGAC GACCAGCTCG ACCGCCTGAT CGTCGCGCCG
CATTACCGCA TCGTCTCGTC CGGGCTGTTC TGGCCCGATC TCGGACTGTC CCGCATCGCC
ACCGTGACGC CGTCGACCGG TGACCGGCCG GAGCGCCAGG ATTCCCCCAC CGCCGACGTG
TTCCGGGTCA CACTGGATCC CGGCGCGGTG ATCACCTTCG TCGCCGAGCT ACGCACCGAC
AAGCTGCCGC AGCTCTATCT GTGGGAACCG GAAGCCTACA AGGACAAGGT CAACTCGTTC
ACGCTGTATC AGGGCATCGT GATCGGCATC TCCGGACTGC TGGCGCTGGT GCTGACCATC
CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCCGCCGCCG CGGCCCTGGC CTGGGCGGTG
CTGGTCTATA TCGGGGTGGA TTTCGGATTC TGGGGCAAGG TGCTGGACAT GTCGTCGGGC
GCCGAGCGGG TGTGGCGCGC CTCCGGCGAA GCCATCCTGG CCGCGACGCT GTTGGTGTTT
CTGTTCGCCT ATCTCAATCT CAGCCGCTGG CACGTGCGCT ATTCGCACAT CACGCTGGGC
TGGCTCGCCT TCCTGGGATC GCTGGTGGCG CTGGCGCTGT TCGATCCGGC GGTGGCGTCT
GGCATCGCGC GGATGTCGCT GGTGCTGATC GCCTTCGCCG GCTTCGCGCT GATCCTGTAT
CTGTCGACCC ACGGCTTCGA CCGCGCGGTG CTGCTGATCC CGACCTGGTT CCTGCTGGTG
GTCTGGGTGA TCGCGGCCGG CATGGCGGTC GCGGGCAGCG TCACCAACGA CATCGTCGGA
CCGGCGCTGC TCGGCGGTCT GGTGCTGATC GTGATGCTGA TCGGCTTCAC GGTGATGCAG
CACGCCTTCG CGGGCGGCAG CGCGCCGACC GGCGTGGTCT CCGATATCGA GCGCCGCGCG
CTGGCGCTGA CCGGCTCCGG CGACCTGATC TGGGATTGGG ACGTCTCCGC CGACAAGGTG
TTCACCAGCC CGGAGACCGA GACCCTGCTC GGGCTGAAGC GCGGCACGCT GGAAGGTTCC
GCGGCGAAAT GGCTGGAAGT GCTGCATCCG CTCGATCAGG ACCGGTTTCG CGCCGCGCTC
GACAGCGTGC TGGATCAGCG CCGCGGCCGG CTCACCCAGG ACTTCCGGCT GCGCACCCCG
GACGGCCGCT TCATGTGGTT CGCGCTGAAG GCGCGCCCGG TGGTCGGCTC CGACGGCGAA
GTCTCGCGCG TGGTCGGCAC GCTGACCGAC GTCACCGAGA TCAAGAACGC CGAAGAGCGC
ATGCTGCACG ACTCGGTGCA CGACAACCTC ACCGGGCTGC CGAACCGCAA GCTGTTCATC
GACCGGCTCA ACGCGGTGGC GAATTTCGCC AAGGCGATGC CGAACCTGCG GCCGACGCTG
ATGGTGATCG ACCTCGACCG CTTCAAGCAG GTCAACGATT CGGTCGGCAT CGCGGTCGGC
GATTCGATCC TGCTGACGCT GGCGCGCCGG CTGACCCGGA TCCTGAAGCC GCAGGACACC
TTGGCGCGGC TCGCCGGCGA CCAGTTCGGC CTGATCCTGA TGTCGGAGCA GGACCCCGCC
AAGATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCC GCGCGCCGAT CGCCTTCAAC
GACCGCGAGA TCTTCCTCAC CGCCTCGATC GGCCTGGCTT TGAGCGATCC GCAGACCCAG
CTCACCGACG AGATCATCAA GGACGCCGAG CTGGCGATGT ATCACTCGAA GCGGATCGGC
GGCGACCGCA TCGACGTCTA CAAGCCGGTG ATGCGGGCGC GCAAGACCGA CCGGCTGACG
CTGGAATCCG AATTGCGCCG CGCCATCGAG CGCCAGGAAA TCACCATCCT GTATCAGCCG
ATCGTGCGGC TGGAAGATCG CTCGATCGCC GGCTTCGAAG CCTTGGCGCG CTGGGATCAT
CCCAAGCTCG GCCGGATGTC GCCGTCGGAA TTCATCTCGA TCGCCGAGGA GATCGGCCTG
ATCGTCGACC TCGGCATGTT CGTGATGGAC CAGACCGCCA AGCAGCTGGC GATCTGGCAG
CGGGCGATGC GCTCGCGCGA GCCGATCTTC GCCAGCGTCA ACGTCTCCTC GCGGCAATTG
CTGCGGCACG ATCTGTTGCA CGACATCCGC ACCGTGCTGT CGCGCTCGAC GGTGGCGCGC
GGCACCTTGA AGCTGGAACT CACCGAATCG CTGGTGATGG AAAATCCGGA ACACGCAGCC
CAAATGCTGC ATCGGATCCG CGAGCTCGGC ACCGGGCTGT CGCTCGACGA TTTCGGCACC
GGGCATTCCT CGCTGGCCTA TCTGCAGCGC TTCCCGTTCG ACACCATCAA GATCGACCAG
TCGTTCGTCC GCACCACCAG CCGCGGCACC CGCCCGGTGA TCCTGAAATC GATCATCGCG
CTGGCGCACG ATCTCGGCAT GGACGTGGTG GCGGAAGGTG CGGAGACCGA TTCCGACGCG
GTGGAGCTGT ACCAGCTCGG CTGCGAATAC GCCCAGGGCT TCGCCTTCGG CGAGCCGATG
GACGCCGACG CCGCGATGAA GCTTCTGACC GAAGAACGGC TGGCCGAGGC GAGCTGA
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| Protein sequence | MRLIRCLALA ALGFMMIAAG SPANALDAVS VRGDAPAIDL TAVLDHQRSE GDRIQVSTAP
GTDGIVRRIE VRAREGGQNW VVFALANNTD DQLDRLIVAP HYRIVSSGLF WPDLGLSRIA
TVTPSTGDRP ERQDSPTADV FRVTLDPGAV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF
TLYQGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGVDFGF WGKVLDMSSG
AERVWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVA LALFDPAVAS
GIARMSLVLI AFAGFALILY LSTHGFDRAV LLIPTWFLLV VWVIAAGMAV AGSVTNDIVG
PALLGGLVLI VMLIGFTVMQ HAFAGGSAPT GVVSDIERRA LALTGSGDLI WDWDVSADKV
FTSPETETLL GLKRGTLEGS AAKWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQDFRLRTP
DGRFMWFALK ARPVVGSDGE VSRVVGTLTD VTEIKNAEER MLHDSVHDNL TGLPNRKLFI
DRLNAVANFA KAMPNLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LTRILKPQDT
LARLAGDQFG LILMSEQDPA KITAFAETIR KTIRAPIAFN DREIFLTASI GLALSDPQTQ
LTDEIIKDAE LAMYHSKRIG GDRIDVYKPV MRARKTDRLT LESELRRAIE RQEITILYQP
IVRLEDRSIA GFEALARWDH PKLGRMSPSE FISIAEEIGL IVDLGMFVMD QTAKQLAIWQ
RAMRSREPIF ASVNVSSRQL LRHDLLHDIR TVLSRSTVAR GTLKLELTES LVMENPEHAA
QMLHRIRELG TGLSLDDFGT GHSSLAYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA
LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DADAAMKLLT EERLAEAS
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