| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0772 |
|---|
| Symbol | |
|---|
| ID | 3969939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 857202 |
|---|
| End bp | 858116 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637923887 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_530662 |
|---|
| Protein GI | 90422292 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.672054 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGC GAAGATTGAC GGCTTCGTTT CTCGACACCT GCGCGGTCGA ACGCCAGCTG
TCGGCGAACA CGCTGCAGGC CTACGGCTAC GACCTCGCGG ATTTCTGTGC ATGGCTCAAA
GGCCAAGGCG AGGCGCCGGC GGTCACGACC GAGCACCTGC GCGACTATCT GGAATCCATG
ATGGTCGCGC GAAAGCTGTC GCCCTCCACG GTGCGACGGC GGATCGCCTG TCTTCGCGCG
TTCTTTCGCT TTCTCGACGA CCGCGGCGAG ATGCCGGACC CGTTCACCGG CTGGCGCCTG
AAGCTGCCGC GCCGCAAGCG GTTGCCGCGC GCGCTGTCGC GCGAGGAGGC CAATCAGCTT
CTGACCTCGG CGCGCGCGCC CGGCGCCGCG CGACAATCGC TGCCGGCGTC GACGCCGCTC
TGCGTCGAGA TCCGGCTGAT GATCTCGACC GGCATCCGGG TCGGCGAGCT GTGCAAGATC
GCGACCGGTG ACGTCTCCAG CGACGGCGCG TCGCTGCGAA TTCACGGCAA GGGCTCGCGC
GACCGCGTGG TCTACGTCAG CAACCCCGCG CTGCGCAACG AACTGCGCAA GCTGACGACG
CTGCGCCAGC GCCTCAGCGC GGGCGACGGC CCGCTGTTCG TCAACCGCAA CGGCGAGAAC
CTGCGGCCCT ACTCGTTCCG CACCAAGCTG CGCAACTTCG CCGGCCAGGC CGGACTGCGG
CGGCGGGTGA CGCCGCATAT GCTGCGGCAC ACCGCTGCCA CGCTGTTGAT CGAAAGCGGC
GTCGACATCA GGATCGTGCA ACGCCTGCTC GGCCATTCCA GCATTGCCAC TACCGAGATC
TACACCCACG TCTCCGATGA GGCGCTGCGT AAGAGCCTAG AGCGTGCCAA CGTGCTGGGT
ATGCTCGCCG CCTGA
|
|---|
| Protein sequence | MELRRLTASF LDTCAVERQL SANTLQAYGY DLADFCAWLK GQGEAPAVTT EHLRDYLESM
MVARKLSPST VRRRIACLRA FFRFLDDRGE MPDPFTGWRL KLPRRKRLPR ALSREEANQL
LTSARAPGAA RQSLPASTPL CVEIRLMIST GIRVGELCKI ATGDVSSDGA SLRIHGKGSR
DRVVYVSNPA LRNELRKLTT LRQRLSAGDG PLFVNRNGEN LRPYSFRTKL RNFAGQAGLR
RRVTPHMLRH TAATLLIESG VDIRIVQRLL GHSSIATTEI YTHVSDEALR KSLERANVLG
MLAA
|
|---|
| |