| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0668 |
|---|
| Symbol | |
|---|
| ID | 3970607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 728539 |
|---|
| End bp | 729645 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637923784 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_530559 |
|---|
| Protein GI | 90422189 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3693] Beta-1,4-xylanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.710822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGC CACGGCACAT CCCGACCTCC TCGAAGCGCG GTGTAACACG CCGGCAATTG
CTGCGGACCG CGCCGGCCGC AGCGCTGCTT GCGCTGGCGT CGCCCGGCGC GCGCGCGGCC
GCCATCCGCC CGCGTCGCAA GATCCCCTAT GGCGCAGCGG TCGCGCTCGA CGATCTGCGC
GGCGATCCGC GGCTCGGCGC CGCGCTCGCC GGCACTTGCA GCCAGATCGT GCCGGTGAGC
GAATTGAAAT GGAGCGAGCT GCGGCCGGCG CCGGGGCAAT TTGCCTTCGA GAAGGCCGAT
GCGCTCGCCG GCTTCGCGGC CGACAACGGC CTTGCGATGC GCGGCCATAC GCTGGTCTGG
TACGCCGCCT TGCCGGACTG GACGAAGGAG ATCGACAGCG AAGCCGCCGC CGAACGCGCG
CTGCGCGAGC ACATCGAGAC CGTGGTGTCG CGCTATCGCG GCCGGATCCG CTCCTGGGAC
GTGGTGAACG AGGTGATCCC CGACGAGGCC CATCAGCCCA CCGACCGCCG GCCATCGCTG
TGGTCGCGCT ATCTCGGCGA GCGCTACATC CCGTTGGCGT TCCGGATCGC CGCGGAAGCG
GATCCCAAGG CGCAGCTGGT GCTCAACGAC TACGACATCG AATTCGGCGA CCCGCGCTGC
CGCCGCAAGC GCGCGGCGTT TCGTCATTTG ATCCGGCAGT TGCAGGACGC CGATGTGCCG
ATCCATGCGG TCGGGCTGCA ATGTCATCTG CACGGCGAGA TGGCGGTCGA TCGCGCCGGG
CTCGAGAGCT TCGTGGCCGA GTTGCACGGC AACGGTCTCA AATGCCTGGT GACCGAACTC
GACGTGATGG ATCAGCATTT GCCGGCGCCG GTGCAACGCC GCGACGCGCT GGTCGCCGCG
CAGGTCGGCG AGCTGCTCGC CGCGGTGACC GCGCCGGGGC CGCTCGACGC TTTGCTGACC
TGGGGCATTT CCGACCGTTA CAGCTGGATT CCCTATGCGG CGCCGCGCGC CGATAAGCGG
CCCAACCGGC CGCTGCCGCT CGATCGCGAA TTCCAGCGCA AGCCGTTCAT GGACGTCATC
GATCAATTCA CCGGCAGGGA GGCATGA
|
|---|
| Protein sequence | MTAPRHIPTS SKRGVTRRQL LRTAPAAALL ALASPGARAA AIRPRRKIPY GAAVALDDLR
GDPRLGAALA GTCSQIVPVS ELKWSELRPA PGQFAFEKAD ALAGFAADNG LAMRGHTLVW
YAALPDWTKE IDSEAAAERA LREHIETVVS RYRGRIRSWD VVNEVIPDEA HQPTDRRPSL
WSRYLGERYI PLAFRIAAEA DPKAQLVLND YDIEFGDPRC RRKRAAFRHL IRQLQDADVP
IHAVGLQCHL HGEMAVDRAG LESFVAELHG NGLKCLVTEL DVMDQHLPAP VQRRDALVAA
QVGELLAAVT APGPLDALLT WGISDRYSWI PYAAPRADKR PNRPLPLDRE FQRKPFMDVI
DQFTGREA
|
|---|
| |