Gene RPC_0656 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_0656 
Symbol 
ID3970634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp711352 
End bp712521 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content62% 
IMG OID637923772 
ProductNapC/NirT cytochrome c-like 
Protein accessionYP_530547 
Protein GI90422177 
COG category[C] Energy production and conversion 
COG ID[COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 
TIGRFAM ID[TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.57103 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAACC CTTTCATCGC AGTCGTTCGA TTCATGAAGA AGCCCGTCGG CCTCGGGGTC 
GGCGCCTTGA TCGGAGTGGT CGTCGGCGTG GTCGGATGGG GCGGCTTCAA CACCGCCATG
GAGGCGACCT CCAGTTTGGA GTTCTGTACG TCTTGTCACG AAATGAGAGA CAATGTCTTT
CAGGAGTACA AGAAGACGAT TCACTACTCG AATCCCGCCG GCGTCCGCGC GGTCTGTTCG
GACTGCCACG TCCCGAAGGA TTGGAGCCAC AAGATCATTC GCAAGGTCCA GGCTTCCAAG
GAGGTCTGGG GCAAGATCAC CGGCGTGATT GATACGCCGG AAAAATTCGA GAGCAAGCGC
CTCGAACTCG CCAAACACGA GTGGGCGCGG ATGAAGGCGT CCGACAGCCG GGAGTGCCGC
AACTGCCACT CCTTCGAGGC GATGGATTTC ACCCACCAGC GGCCGAAAGC CTCCAAGCAA
ATGCAGAAGG CCTTCAAGGA AGGCGGCACT TGCATCGACT GTCATAAGGG CATCGCGCAC
AAATTGCCGG ATATGTCGGG CGGCTTCCGC TCCAAGATGA AGGACCTCAA AGCCGAGGGC
CTGAAGAACG GCGGCAAGGC GGAGAAGAGC TGGGCGCTCA CCACCTCGCC GGCCTGGGGC
GATTTGGACA AGGCCGCCGC CGGCGGTTCG GGTGAAGGCC GCATCCTGCC GGCCGCGCCT
GTCACCGTGC TGAAGCTGTC GGGCGATCTT GCTCAAGTCC GCATCGATGG CTGGCAGCAG
GCCGGCGCCG AACGGCTGAT CGTCGCGCTG CCCGGCAAGC GGATCATGCT CGCCGCGGTC
TCTGCCGCGC TTGCGGAGAC CGCGCAAGTG AAGTCGACCC GCCATGATGA CGAGACCGAC
CTCGATTGGA AAGAGGCCTC GATCGTGCTG TGGATGCCGA AGGCCAATCT CACCGCCGAC
CAGAAAGCGT TGTGGGCCTA CGGCGAGGAA ATGTTCGACG CGTCCTGCGG CGCCTGTCAT
TCGCCAGCTC CTCCCGGCCA TTTCCCGGCG AACCAGTGGG TCGGCATCGT CAACGATATG
AAGGCCAACA CCTCGCTCGA GGAAGACGAG GTGCGCTTCC TGCAGGCCTA TCTTCAGAAC
CACGCTCAGG ACGTCGTGGG CGGTCACTGA
 
Protein sequence
MANPFIAVVR FMKKPVGLGV GALIGVVVGV VGWGGFNTAM EATSSLEFCT SCHEMRDNVF 
QEYKKTIHYS NPAGVRAVCS DCHVPKDWSH KIIRKVQASK EVWGKITGVI DTPEKFESKR
LELAKHEWAR MKASDSRECR NCHSFEAMDF THQRPKASKQ MQKAFKEGGT CIDCHKGIAH
KLPDMSGGFR SKMKDLKAEG LKNGGKAEKS WALTTSPAWG DLDKAAAGGS GEGRILPAAP
VTVLKLSGDL AQVRIDGWQQ AGAERLIVAL PGKRIMLAAV SAALAETAQV KSTRHDDETD
LDWKEASIVL WMPKANLTAD QKALWAYGEE MFDASCGACH SPAPPGHFPA NQWVGIVNDM
KANTSLEEDE VRFLQAYLQN HAQDVVGGH