| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0652 |
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| Symbol | |
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| ID | 3970630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 704396 |
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| End bp | 706204 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637923768 |
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| Product | putative type IV secretory pathway VirD4 components |
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| Protein accession | YP_530543 |
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| Protein GI | 90422173 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGAC ACCTGCGGAT TATCACTTTC GTGGCGGCAA TGAGCTGCTT TGCTTTCGCG
GCTGGTTCTT ACCAGCTCGG CTTTGAGGTT TGGCCACTCG GCGTCACGGT GGCGGATGGA
ACGACCGTGC CCTATCGTTC GGCGCAGGTT CACGCGTGTG TCAGCCAACG CATTTTGGGG
TGGTTCGGAG ACCGCAACGG TGAAGCCTAT TGGCTGCTTT GCCGGCAGCA GCTTTCGCAA
TCTCGTGCTT TGGACGGCTT CGAGATTCGG TTCTGGACCG TTTTCGGCTC CAGCATCGCC
GCGCTCGTGG CGCTGTTCGG CTTCGCGCTG AGCCTTCGCC TGGATTCACC CGCGTTGAAG
ATCATTCGCG GAGCGCGATT GCATGCAGGC GGTCCAGGCC TGAAGGCCTT TGCCCGGGCT
GCTGCCGTTG AATGCCGGAT CCACGGCGAA GGCGTGGCCC TGGTGCCAGC TATCCCCATT
GGGCGCGAGC GCGAGGCACG ACACTTTTTG ATCCTCGGCA GCGTCGGCGG CGGCAAGACC
CAGACCATGC TGAATCTGAT CGACGGGGCA AATGCACGAG GGGATGGAAT CCTGGTGCTC
GACACCAAGG GGGACATGAT GGGCGGTCTT CCCGCGCAGG GAGATCCCCT CCTTGTCGCC
CCCCATGACC GCAGGTCGCT GGTCTGGGAT GTGGCGGCCG ATTGCAGCAT CAAGCAGGAC
GCCCGCGAAC TCGCCGCCCG CTTTATTCCG CCAAGCTCAG ATCCGATGTG GTCGCAGGCG
GCGCAGGAAA TCTTTGTCGC CTGCATCGTT CATCTGCAGG CGACCAGAGG GCAGGATTGG
GGTTGGGCCG ACCTCGAAGC CGTCGTGACC GCCGATGTCG ATCAGCTCAC GGTTTTCGCA
AAGGATCACA ACCCGAATGC GCTGCGGCTG CTCAACCAGC CCGACAGCAA GACCACGCAG
AGCATTCTGA CGACCTTCCA GACCCACATG CGGATTGTCT CCGTCCTGGC CGAGGCTTGG
CCCGACCGGT CGGCCGAGCG CTTCTCGATT CGTGCCTGGC TGCACAAACC AATCCCCTAC
CGCCCGCTGA TCCTGCAGCA TGATCCCGGA TATCCCGAAC TGTCGCGGAT CTGGATCGGC
AGCATGTTGG GCCTGCTCGC CTCGGCGGTC GGTAGCCCGA CCTTGTCCGA AAGCAGGCAA
CGGCGGGTGT GGCTATTCCT CGACGAGTTC CCGCAGCTGC CGCCGATCAA GCAGTTTGCG
ACCTTCCTAG AGCTCGGCCG CTCCAAGGGT GTGGCCGTCG TCATTGGGGC TCAGGACACC
GCCCAGATCC GCGCCGTCTA TGGCCAGGAC CAGGCCAAAT CCTGGTTCGG CATGACCGGC
ACCAAGATCA TTACCCGCAT CAACGCCAGC GAAGCCGCCG AAGACATCAG CCGCCTGATC
GGGGACCAGG AAGTCGAACG GTCAACGCAA AGCGCGACCC GCACCAGTGG CAAGACCAGC
GTCACCGAAA GCATTCAGCG CGAGATTCGA CGCGTGGTCA CAGCGTCCGA GCTTGCCTCC
CATCTCGGGC CGACCAAAGG CGGCGTCAGG GTCCTGTTCA TCGGCCTCGG TGAAGACGTC
TACGAGTTGG AGCTGCCCTA TCTCAGCCTG CCGAAACTGC GGGAGCCGAT CATGCCGGCT
GATTGGACCC AGCCCTCGGT TGCAAGAGCC TCAAAGACCG ACAGCGGAGA GACTATTCCT
GAGCCGTCGC CGCCCCCCTC CCGTCTCACC AAGGACCTGG CCGACAAGAT CCTGAAGACG
CGGCGCTGA
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| Protein sequence | MTRHLRIITF VAAMSCFAFA AGSYQLGFEV WPLGVTVADG TTVPYRSAQV HACVSQRILG
WFGDRNGEAY WLLCRQQLSQ SRALDGFEIR FWTVFGSSIA ALVALFGFAL SLRLDSPALK
IIRGARLHAG GPGLKAFARA AAVECRIHGE GVALVPAIPI GREREARHFL ILGSVGGGKT
QTMLNLIDGA NARGDGILVL DTKGDMMGGL PAQGDPLLVA PHDRRSLVWD VAADCSIKQD
ARELAARFIP PSSDPMWSQA AQEIFVACIV HLQATRGQDW GWADLEAVVT ADVDQLTVFA
KDHNPNALRL LNQPDSKTTQ SILTTFQTHM RIVSVLAEAW PDRSAERFSI RAWLHKPIPY
RPLILQHDPG YPELSRIWIG SMLGLLASAV GSPTLSESRQ RRVWLFLDEF PQLPPIKQFA
TFLELGRSKG VAVVIGAQDT AQIRAVYGQD QAKSWFGMTG TKIITRINAS EAAEDISRLI
GDQEVERSTQ SATRTSGKTS VTESIQREIR RVVTASELAS HLGPTKGGVR VLFIGLGEDV
YELELPYLSL PKLREPIMPA DWTQPSVARA SKTDSGETIP EPSPPPSRLT KDLADKILKT
RR
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