| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0583 |
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| Symbol | |
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| ID | 3970749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 635522 |
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| End bp | 637753 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637923700 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_530477 |
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| Protein GI | 90422107 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACAA ATCGGCCGAA GAAAAAACAG CTGCAGCAAG CCGCGCACCG GCGTCCTGCG
TTGTTGCGCG GTGCGGCCAA GCCGAAGACC AAAGCGGTGC CCAAGGACCG GCGCATCGCC
GCCGAGATCG GCGAGGTGGT GCGCAAGCGC GCCGCGGCGG ATGCGGCGAT CGCCGAAGCC
AGGAAATCCC ACGAGCGGTT GCGCGAGGCG ATCGACATCC TGCCGCAAGG TATCGTGTTC
CTCGACGCCG AAGGCCGCTA CATTCTCTGG AACAAGAAAT ACGCCGAAAT CTACAATCGC
ACCGCGGATC TGTTTCAGCC CGGCGTCAAG ATGATCGACA CGCTGCGCGT CGGCGTGGCC
CGCGGCGACT ATCCCGAAGC GCTCGGCCAT GAAGAGGAAT GGATGGCCGA ACGGATGGCC
AAGCTGTTCC AGCCCGGAGA ACGCCACGAG CAGCTGATCT CCGACGGCCG CTGCATCCAG
ATCGAGGAGC GGATGACCGC CGACGGCGGC ATCATCGGCT TGCGCATCGA CATCACCGAG
CTGAAGCAGC GCGAGGCCTC GTTCCGGCTG TTGTTCGACA GCAATCCGGT GCCGATGATC
GTCTGCGCGC TGGCCGATGA GCGCATCCTC GGCGTCAACG ACGCCGCGGT CGAGCATTAC
GGCTATTCGG CCGCCGAATT CAGCACGCTG ACGATCCGCA ATCTGCAGGC GTTCGAAGCC
GAGCGGCCGT GGACCGGCGA CCAGAGCACC GACGAGCGCG CCGCGCGGAC CTGGAAGCAC
GTCAAGGCCG ACGGCTCGCT GATCGATCTG GCGGTGTATT CGCGGCAACT GCTGTACGGC
GGCGAGCCGG CGGTGCTGCT GGCCTTGATG GACATCACCG AGCGCAAGCG CGCCGAGATG
CGGCTCGCCT TCATGGCGCA GCACGACGGA TTGACCGGGC TGCCGAACCG CAACTCGCTG
CGCAAGCGGC TCGACGAGAT GCTGGTGCAC ACCCGGCGCG GCAACGAAAA AGCCGCGGTG
CATTTCCTCG GCATCGACAA TTTCAAGGGC GTCAATGACA GCCTCGGCCA CGCCGTCGGC
GACAAGCTGT TGCGCGGCAT CGCGCGGCGG CTGCGCTCGA CCTTGCGCGA AGAGGACGTG
ATCGGTCGGC TGAACTCCGA CGAGTTCGCC ATCCTGCAGA GCGGCGTCAG CCGCCCCGAG
GACGTCGTGC TGCTGGCCAA GCGGCTGCTG CACGCGATCG GCGAGCCGTT CTTGCTCGAC
GGCAATTCGG TGGTGATCGG CGCCAGTATC GGCATCGCGA TGGCGCCCGG CGACGGCGAC
GATTCGGAGA AGCTGTTGAT GAGCGCCGAC ATGGCGCTGG CGCGCGCCAA GACCGAGACC
CGCGGCACCT TCAGCTTCTT CGAACCCGGG ATGGACGCCC GCGCCCAGAC CCGCCGCAAG
ATCGAAAGCG AACTGCGCGG CGCGATCCAG AACGACGTGC TGCGGCCGCA TTATCAGCCG
CTGATCGGGC TCTCCAACGG CCGCATCACC GGCTGCGAGG CGCTGGTGCG CTGGCCGCAT
CCGGAACGCG GCATGGTGTC GCCTTCGGAG TTCATTCCGG TGGCGGAAGA TACCGGGCTG
ATCAACGCGC TCGGCGCCCA GGTGCTGAAA CGCGCTTGCG AGGACGCGGC GAACTGGCCG
GACGACGTCC GCGTCGCGGT CAATCTGTCG CCGCTGCAAT TCCGGCTCGG CAACCTGCTG
TCGCTGGTGA TGGACGCGCT GAAGCAGACC GGGCTGCCGC CGAAGCGGCT CGAACTCGAG
ATCACCGAGA CGCTGCTGTT GGAAAAGAGC AGCCAGGTGA TCGCCACGCT GCACGCGCTG
CGCGCGCTCG GGGTGCGGAT CTCGATGGAC GATTTCGGCA CCGGCTATTC GAGCTTGAGT
TACTTGCGCA GCTTTCCGTT CGACAAGATC AAGATCGACC AGTCGTTCGT GCGCGGGCTG
TGCACCAACC GCGAACTGCA GGCGATCGTG CGCTCGATCA TCAGCCTCGG CATGGGGCTC
GGCGTCACCA TCACCGCCGA GGGCGTCGAG ACCGAATCCG AATTGAGCTG GCTGCGCGCC
GAGGGCTGCC ACGAGGCGCA GGGCTTCTTG TTCAGCGCGG CGCGGCCGAA CAGCGAGATC
ATCGACCTGC TCAGCGTGCA GAGCGGCGCC GATTTCGCCA CACCCGATCG CGCGTCGATT
CAGGTGGCGT GA
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| Protein sequence | MPTNRPKKKQ LQQAAHRRPA LLRGAAKPKT KAVPKDRRIA AEIGEVVRKR AAADAAIAEA
RKSHERLREA IDILPQGIVF LDAEGRYILW NKKYAEIYNR TADLFQPGVK MIDTLRVGVA
RGDYPEALGH EEEWMAERMA KLFQPGERHE QLISDGRCIQ IEERMTADGG IIGLRIDITE
LKQREASFRL LFDSNPVPMI VCALADERIL GVNDAAVEHY GYSAAEFSTL TIRNLQAFEA
ERPWTGDQST DERAARTWKH VKADGSLIDL AVYSRQLLYG GEPAVLLALM DITERKRAEM
RLAFMAQHDG LTGLPNRNSL RKRLDEMLVH TRRGNEKAAV HFLGIDNFKG VNDSLGHAVG
DKLLRGIARR LRSTLREEDV IGRLNSDEFA ILQSGVSRPE DVVLLAKRLL HAIGEPFLLD
GNSVVIGASI GIAMAPGDGD DSEKLLMSAD MALARAKTET RGTFSFFEPG MDARAQTRRK
IESELRGAIQ NDVLRPHYQP LIGLSNGRIT GCEALVRWPH PERGMVSPSE FIPVAEDTGL
INALGAQVLK RACEDAANWP DDVRVAVNLS PLQFRLGNLL SLVMDALKQT GLPPKRLELE
ITETLLLEKS SQVIATLHAL RALGVRISMD DFGTGYSSLS YLRSFPFDKI KIDQSFVRGL
CTNRELQAIV RSIISLGMGL GVTITAEGVE TESELSWLRA EGCHEAQGFL FSAARPNSEI
IDLLSVQSGA DFATPDRASI QVA
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