| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0540 |
|---|
| Symbol | |
|---|
| ID | 3970781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 582055 |
|---|
| End bp | 583956 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637923656 |
|---|
| Product | cobalt chelatase, pCobT subunit |
|---|
| Protein accession | YP_530434 |
|---|
| Protein GI | 90422064 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01651] cobaltochelatase, CobT subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.263292 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAT CCAACAGCAA GTTCCGCGGC AACTCGCGTG AAGCGCCGAC CGAGCCGTTC
AAGCGCGCGG TGACCGCGTG CCTGCGCGCC ATCGCCAAGA CCCCGGAGCT GGAAGTCAGC
TTCGCCGCCG AGCGCCCAGG GCTATCGCCG GGCAAGGCGC GGTTGCCCGA ACCGGCGCGC
AAGATGAGCA GGCGCGACGC CGCGATCGTG CGCGGCCACG CCGATTCCAT CGCGCTGAAG
CTCGCCTGCC ACGACGCCAA GCTGCATCGC AAACTGATGC CGGGCAATCC GCAGGCCCGC
GGCGTGTTCG AAGCCGTCGA GCAGGCCCGG GTCGAGGCGC TCGGCTCCCG CCGCATGGCC
GGGGTGGCGA AGAACCTCAC CGCGATGCTC GACGATCATT TCCACCGCGG CAAGTTCGAC
GAGATCACCG ACCGCGCCGA CGCGCCGTTG CCCGATGCGC TGGCCATGCT GGTGCGCGAA
CGGCTCACCG GCCTCGCGCC GCCGGCGGCG GCGAAGAAGA TGGTCGACCT CTGGCGTCCG
GTGCTGGAAG ACAAGATCGG GCCTAGGCTC GACCGGCTCG AGCGGTTTGC CGAGGATCAG
ACCAAGTTCG GCGACGCGAT TCACGATCTG TTGCAGGCGT TGGAGCTCGG CGACGATCGC
AACGCCGACG CCGACGAGGA CGACACCGAA GAAGAGAACA AGCAAGGCGA GAACGATCAA
TCCGGCGCCG AAGGTTCGCC CGACAGCGAA GCCGCGCAGG AGATGAGCGC CGACCAGGCC
GAGGCGTCGT CGGAAGAGAC ATCCGACAGC GCCATGGAGA GCGCGCAGGC CTCGATGAGC
GACGCTTTCG ACGACGGTGA ACTCGGCGAC GACGAGACCC CGGGCGAAGC GACGCGACCG
AATTCGCGCG GCGGCAACGA GCCGCGCGGC CCGGAATATC ACGCCTTCGC GCCGAAATTC
GACGAGGTGG TCGCCGCCGA AGACCTCTGC GACCACGACG AATTGGAGCG GCTGCGCAGC
TATCTCGACA AGCAGCTGGC GCATCTGCAG GGCATCGTCG CCCGGCTCGC CAACCGCCTG
CAGCGCCGCC TGATGGCGCA GCAGAACCGC GCCTGGGATT TCGATCTCGA AGAGGGGGTG
CTGGATCCGG CGCGGCTGTC GCGCGTGGTC ACCGATCCGT TCCATCCGTT GTCGTTCATG
AGCGAGAAGG AAGCGACCTT CCGCGACACC GTGGTTACGC TGCTGCTGGA CAATTCCGGC
TCGATGCGCG GAAGACCGAT TACAGTGGCG GCGACCTGCG CCGACATCCT GGCGCGAACC
CTGGAGCGCT GCGGCGTCAA GGTGGAGATT CTCGGCTTCA CCACCCGGGC CTGGAAGGGC
GGGCAGTCGC GCGAAGCCTG GCTCGCCGCC GGCAAGCCGG CGTTGCCGGG CCGGCTCAAC
GATCTGCGCC ACATCATCTA CAAATCCGCC GACGCGCCGT GGCGCCGCGC GCGCAAGAAT
CTCGGGCTGA TGATGCGCGA GGGCTTGTTG AAAGAGAACA TCGACGGCGA GGCGCTGGAC
TGGGCGCACA AGCGGCTGCT CGGCAGAAGC GAGCAGCGCA AGATCCTGAT GATGATCTCC
GACGGCGCGC CGGTCGACGA CTCCACGCTG TCGGTCAATC CCGGCAACTA TCTGGAGCGG
CATCTGCGCC ACATCATCGA GGAGATCGAG ACCCGCTCGC CGGTGGAATT GATCGCGATC
GGCATCGGCC ACGACGTGAC GCGCTATTAT CGCCGCGCGG TGACCATCGT CGACGCCGAG
GAACTCGGCG GCGCGATCAC CGAGAAGCTC GCCGAATTGT TCAGCGAAAC CGAGACGCCG
CCGACCGGGC CCGGCCGCCG CCGCCGGCGG CTGCATTCGT AG
|
|---|
| Protein sequence | MTTSNSKFRG NSREAPTEPF KRAVTACLRA IAKTPELEVS FAAERPGLSP GKARLPEPAR
KMSRRDAAIV RGHADSIALK LACHDAKLHR KLMPGNPQAR GVFEAVEQAR VEALGSRRMA
GVAKNLTAML DDHFHRGKFD EITDRADAPL PDALAMLVRE RLTGLAPPAA AKKMVDLWRP
VLEDKIGPRL DRLERFAEDQ TKFGDAIHDL LQALELGDDR NADADEDDTE EENKQGENDQ
SGAEGSPDSE AAQEMSADQA EASSEETSDS AMESAQASMS DAFDDGELGD DETPGEATRP
NSRGGNEPRG PEYHAFAPKF DEVVAAEDLC DHDELERLRS YLDKQLAHLQ GIVARLANRL
QRRLMAQQNR AWDFDLEEGV LDPARLSRVV TDPFHPLSFM SEKEATFRDT VVTLLLDNSG
SMRGRPITVA ATCADILART LERCGVKVEI LGFTTRAWKG GQSREAWLAA GKPALPGRLN
DLRHIIYKSA DAPWRRARKN LGLMMREGLL KENIDGEALD WAHKRLLGRS EQRKILMMIS
DGAPVDDSTL SVNPGNYLER HLRHIIEEIE TRSPVELIAI GIGHDVTRYY RRAVTIVDAE
ELGGAITEKL AELFSETETP PTGPGRRRRR LHS
|
|---|
| |