| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0502 |
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| Symbol | |
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| ID | 3970264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 540965 |
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| End bp | 542689 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637923618 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_530396 |
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| Protein GI | 90422026 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0276751 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACATCTG CCGACCCGTC GACCGCCGGC TCCTCCGCGG CATCGCCCGG CCGCCCCGAC
GAGGCCGACA TCCTGGCCGC GCTCGGCCAT GCGGCCTTCG TCTGGGACAT CGCCAGCGAT
GCCATGGCCT GGAGCCCGGC CGCCGCCGCG ATCTTCCGCG ACCTCCCGGC CGAGGCGCTG
GCCAGCGGCG CCAGCTTTGC CAACCTGATC GAGCCGGTGC GTGCGGTGCG TTCCGAGGCG
CTGCTCGGTT CGCCAGGGGG GAGCCACGGC GTTGCCTATC GGATCGAATA CGGCGTGCGT
GCCTCGACCG CGGCCCCGGT GTGCTGGATC GAGGAAACCG GCTGTTGGTT CGCCGCGCCG
GACGGCAAGC CGGCGCGGGT CGAAGGCATC GTGCGGGTCA ACAACGAACG GCACGCCCGC
GAGCAGCAAT TGGTCAAGCT GGCGCAGCAC GATCCGTTGA CCGGCGAACT CAACCGCAGC
CATCTGATGG CCTCGCTCGC CGAAGCGGTC GACGAGGCGT CGCAGTTTCG CTCCAACTTC
GCTTTCATGC TGATCGGCAT CGACCATCTG GCGCGGGTCA ACGACGCCTT CGGCTTCGAC
GTCGCCGACC AGGTGATCGG CGAGGTCGCC AAGAGGATCC GCGCGCGATT GCGCGCCGGC
GATCTGCTTG GGCGATTTTC CGGCAACAAA TTCGGCCTGA TCTTGAAGAA CTGCACCATC
GACGACATGA CCGTCGCAGC CGAGCGGTTT CTCGCCGGGA TTCGCGACGA AGTGGTGCCA
ACCAAATCCG GCCCGGTCGC GGTGACGGCG TCGATCGGCG GCGTCAGCGC CCCGCGTTAT
GCGCGCGGCG CCGACGAGGC GCTGAACCGC GCCCATGAAT CGCTCGACGC CGCCAAGAGC
CGGCGCCGCG GCTCGTTTTC ATTGTGGCGG CCGAACGTCG AGCGCGACGC CCAGCGCCGG
GTCAACATCC GGGTCACCGA CGAGATCGTC ACCGCGCTGA ACGAGCGCCG CATCGTGATG
GCGTTCGAGC CGGTGGTGCA GGCGGTGTCC CGCGCCCCGG CGTTCCACGA ATGCCTGGTG
CGGATGAAAC AGGACGACGG CGAATTGCTG CTGGCGCCCG ACATCGTGCC GGTCGCGGAG
AAACTCGGGC TGATCCGGCT GGTCGACCAT CGCGTGCTCG AACTGGTGGT GGCGGAACTC
GCCGCCGCGC CCGGCGTCGA GCTCAGCCTC AACATCTCGC CCGATACCAC GATGGACGCC
GACTGGTGGG CCAGCATCGA ATCGCTGCTC GGCGCCAATC CCGGCGTCGC CGAGCGGCTG
ATCGTCGAGA TCACCGAGAC GGTGGCGATC CAGGACCTCG ACGACGTCCG CGGCTTCGTC
AACCGGCTGA AGAATTTCGG CGCCAGGATC GCGATCGACG ATTTCGGCGC CGGCTACACC
TCGTTCCGCA ACCTGCGCAA TCTCGGCGTC GATATCGTGA AGATCGACGG CGCCTTCGTG
CAGAACATCG CGCGCTCGGC CGACGATCGC GCTTTCGTGC AGACGCTGAT CGACCTGGCG
CGTCGGCTCG AGATCAAGAC CGTCGCCGAA TGGGTGCAGG ACGAAGCGTC GGCGATCATG
CTGCGCGATT GGGGCTGCGA CTACATCCAG GGCCGGCTGA TCGGGCTGGC CTCCGCGGAG
CGGCCGTGGG CGGTTCGTGC AACCGGAGTC ACCGCGGCGA GCTGA
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| Protein sequence | MTSADPSTAG SSAASPGRPD EADILAALGH AAFVWDIASD AMAWSPAAAA IFRDLPAEAL
ASGASFANLI EPVRAVRSEA LLGSPGGSHG VAYRIEYGVR ASTAAPVCWI EETGCWFAAP
DGKPARVEGI VRVNNERHAR EQQLVKLAQH DPLTGELNRS HLMASLAEAV DEASQFRSNF
AFMLIGIDHL ARVNDAFGFD VADQVIGEVA KRIRARLRAG DLLGRFSGNK FGLILKNCTI
DDMTVAAERF LAGIRDEVVP TKSGPVAVTA SIGGVSAPRY ARGADEALNR AHESLDAAKS
RRRGSFSLWR PNVERDAQRR VNIRVTDEIV TALNERRIVM AFEPVVQAVS RAPAFHECLV
RMKQDDGELL LAPDIVPVAE KLGLIRLVDH RVLELVVAEL AAAPGVELSL NISPDTTMDA
DWWASIESLL GANPGVAERL IVEITETVAI QDLDDVRGFV NRLKNFGARI AIDDFGAGYT
SFRNLRNLGV DIVKIDGAFV QNIARSADDR AFVQTLIDLA RRLEIKTVAE WVQDEASAIM
LRDWGCDYIQ GRLIGLASAE RPWAVRATGV TAAS
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