| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0487 |
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| Symbol | |
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| ID | 3970249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 527107 |
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| End bp | 528270 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637923603 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_530381 |
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| Protein GI | 90422011 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0299578 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.132982 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATC CGGTTCTCAA ACTCGCGCCC GAGCAGAAGG GCAATCCGCC GGAGCCCACC
ACGCAGCGCG CGGCAGCGCC GCGGCGCAGC CTGTTCGGCG CGCTGAAGGC CTATCGCCGG
CCGCTGTTGC TGATCGTGCT GCCGCTGCTG GTGCTGATCG CCGGCATCGC CTTCTATCTG
GAGGGCGGCC GCTACGTCAC CACCGACGAC GCCTATGTGG GCGCGCAAAA GGTGCTGATC
ACGCCGGACG TCGCCGGCAA GATCATCGAC GTCGCGGTGA AGGAAGGTCA ATTGGTCAAC
ACCGGCGACG TGCTGTTCCA GATCGACCCG GTGCCGTTCC AGCTCGCCGT GCAGCAGGCC
AAGGCCAAGC TCGACGACGC CAAGACCAGC CACGACAATC TGGTCGCCAA TGTGAAGCTC
TATGGCCAGA CCGTCGAACT GGTCAACGCC GGCATCGCCA TCAAGCAGCG CGACGTCGAG
CGCAAGGGCT CGCTGGTGAA GAGCTCGGCC GGCTCGCAGC TCGACCTCGA CAATTCGAAT
TCGGCGCTGG TCTCCGCGCA GGCGCAGCTG CAGCTGGTCA AGCAGCAGCT CTCCACCGCG
CTCAATCAGC TGCTCGGCAA TCCCGAGCTG CCGCTCGAAC AATTCCCCGC CTACATGCAG
GCCAAGGCGG CGCTCGACGA CGCGCAGCGC AACCTCGATC TGTCGACGGT GCGCGCGCCG
ATGAACGGCA CCGCCACCCA GGTGGACAAC ATCCAGCTCG GCCGCTTCGT CGCCGCCGGC
AATCCGGTGT TCAGCGTGAT CGACACCACC GCGCCGTGGG TCGACGCCAA TCCGAAGGAA
AGCGATTTCA CCTACGTCAC CGTCGGGCAG AAGGTGACGA TCGACATCGA CGCCTTCCCC
GACCACGCCT TCATCGGCAC GGTGGGCTCG CTGTCGCCCG GCACCGGCGC GCAATTCGCC
ATCCTGCCGG CGCAGAACGC CACCGGCAAC TTCGTCAAGG TGGTGCAGCG GGTGCCGGTG
CGGATCTATT TCGACACCAA CGACAGAGCG GTGCGCAAGC TGAAGGCCGG GATGAGTTCC
TACGTCTCGA TCGACACCAA GCACACCCGC TCGCTGGCCG GACTGATCGG GCTGTCGTCG
GCCAAAGCGC AGCCGCAGGA TTGA
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| Protein sequence | MADPVLKLAP EQKGNPPEPT TQRAAAPRRS LFGALKAYRR PLLLIVLPLL VLIAGIAFYL
EGGRYVTTDD AYVGAQKVLI TPDVAGKIID VAVKEGQLVN TGDVLFQIDP VPFQLAVQQA
KAKLDDAKTS HDNLVANVKL YGQTVELVNA GIAIKQRDVE RKGSLVKSSA GSQLDLDNSN
SALVSAQAQL QLVKQQLSTA LNQLLGNPEL PLEQFPAYMQ AKAALDDAQR NLDLSTVRAP
MNGTATQVDN IQLGRFVAAG NPVFSVIDTT APWVDANPKE SDFTYVTVGQ KVTIDIDAFP
DHAFIGTVGS LSPGTGAQFA ILPAQNATGN FVKVVQRVPV RIYFDTNDRA VRKLKAGMSS
YVSIDTKHTR SLAGLIGLSS AKAQPQD
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