| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0415 |
|---|
| Symbol | |
|---|
| ID | 3970867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 445890 |
|---|
| End bp | 447551 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637923530 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_530309 |
|---|
| Protein GI | 90421939 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.774408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGA CCCAACGCTT AGAATTCCGC CAGTCGCAAT CGCTGGTGAT GACGCCGCAG
CTGATGCAGG CGATCAAGCT GCTGCAACTG TCGAATCTCG ACCTCGCCAG CTTTGTGGAG
GACGAGCTCG AGCGGAACCC GCTGCTCGAT CGCGCCAATG AGAACGGCGA ACCGCCGGTT
CCGGGCGAGC TCGCGCCGGA GCGCGCCGAA TTCTCCGACC GCGACGACGC CGCGTCGGGA
TCTGGCGAGG ATGCGGGGGC GGATGGCTCG GATTTTTCCG ACCGCGCAGC CGGCGATGGC
TTTGAAGCCT CGGCCGAGGA CTGGATGCAG CGCGACCTCG GCAGCCGCGC CGAGATCGAA
CAGACCCTCG ACACCGGCCT CGACAATGTA TTTTCCGAAG AGCCGGCCGA GACCGCTGCG
CGCACCGCGC AGGACGCAGC CCCAACCGCC TTCACCGAAT GGGGCGGCGG CTCGTCGAAC
GACGACGGCT ACAATCTGGA AGCCTTCGTG GCCGCCGAAA TCACGCTGGG CGGCCATCTG
GCCGAACAGC TGGCGGTGGC GTTCACCGAT CCCAAGCAGC GGCTGATCGG GCAGTACCTG
GTCGACCTGG TCGACGACGC CGGCTATCTG CCGCCGGATC TCGGCGACGC CACCGAACGG
CTCGGCGCCA GCGCCGAGCA GGTCGAGGCG GTGGTCGCAG TGCTGCAGAA ATTCGACCCC
GCCGGGGTCT GCGCGCGCAA CCTCAGCGAA TGCCTGGCGA TCCAGCTGCG CGATCGCGAC
CGCTACGATC CGGCGATGCA GGCCTTGGTC GAGCATCTCG ATCTGTTGGC CAAGCGCGAC
ATCGGCGCGT TGCGCCGGAT CTGCGGCGTC GACGACGAGG ACCTCGCCGA CATGATCGGG
GAGATCCGCC ATCTCGATCC GAAGCCGGGG CTGAAATTCG GCACCGCGCG GGTGCAGACC
GTGGTGCCCG ACGTCTATGT GCGGCCCGGG CCGGACGGCG GCTGGCATGT CGAGCTGAAC
AGCGAGACGC TGCCGAAGGT CCTGGTCAAT CAGGTGTATT ATTCCGAACT TTCGAAGACG
ATCCGCAAGG ACGGCGACAA GGCCTACTTC ACCGATTGCC TGCAGAACGC CACCTGGCTG
GTGCGCGCGC TGGATCAGCG CGCCCGCACC ATCCTCAAGG TCTCCACCGA GATCGTGCGC
CAGCAGGACG GCTTCTTCAC CCAGGGCGTC GCCCATCTGC GGCCGCTCAA TCTGAAAGCC
GTCGCAGATG CCATTCAGAT GCACGAGTCG ACAGTCTCGC GCGTGACCGC CAACAAGTAT
ATGGCGACCA ATCGCGGGAT CTTCGAACTG AAATACTTCT TCACCGCGTC GATCGCCTCG
GCAGACGGCG GCGAAGCCCA TTCCGCCGAG GCGGTGCGCC ATCACATCAA GCAATTGATC
GACGGGGAAA ACCCGGCGAT TATTCTGTCC GACGACACCA TCGTTGAAAA ACTGCGCGAG
GCTGGTATTG ACATCGCCCG GCGCACCGTC GCCAAGTACC GCGAAGCGAT GCGGATTCCT
TCCTCCGTCC AGCGTCGCCG AGACAAGCAA AGCATGCTTG GAAATGCACT CACAGCGCCG
GCAACAACGG CAGACCGGTC CCGCGACACC GCACCGGCTT GA
|
|---|
| Protein sequence | MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLASFVE DELERNPLLD RANENGEPPV
PGELAPERAE FSDRDDAASG SGEDAGADGS DFSDRAAGDG FEASAEDWMQ RDLGSRAEIE
QTLDTGLDNV FSEEPAETAA RTAQDAAPTA FTEWGGGSSN DDGYNLEAFV AAEITLGGHL
AEQLAVAFTD PKQRLIGQYL VDLVDDAGYL PPDLGDATER LGASAEQVEA VVAVLQKFDP
AGVCARNLSE CLAIQLRDRD RYDPAMQALV EHLDLLAKRD IGALRRICGV DDEDLADMIG
EIRHLDPKPG LKFGTARVQT VVPDVYVRPG PDGGWHVELN SETLPKVLVN QVYYSELSKT
IRKDGDKAYF TDCLQNATWL VRALDQRART ILKVSTEIVR QQDGFFTQGV AHLRPLNLKA
VADAIQMHES TVSRVTANKY MATNRGIFEL KYFFTASIAS ADGGEAHSAE AVRHHIKQLI
DGENPAIILS DDTIVEKLRE AGIDIARRTV AKYREAMRIP SSVQRRRDKQ SMLGNALTAP
ATTADRSRDT APA
|
|---|
| |