Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0291 |
Symbol | trmE |
ID | 3971050 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 313243 |
End bp | 314592 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637923405 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_530185 |
Protein GI | 90421815 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATTCGC GCCAGCAAAC CATCTTCGCA TTATCCTCGG GCCGACCGCC GGCGGCGCTG GCGATCGTCC GGGTGTCGGG GCCTGAGGCC GCAATCGTGC TCGAGCGAAT CGCCGGACGA TTGCCGCCGC CGCGCCAGGC GATGCGCGCG CTGTTGCACG ACGCGAGCGC GCAGCCGATC GACGACGCCA TCGTGCTGTG GTTTCCGGCG CCGCGGAGCG CCACCGGCGA GGACGTCGCC GAGTTTCACA TCCATGGCGG CCGCGCGGTG CTGAGCGCGG TGATCGCGGC GATCGGCACG AACGAAAATT TGCGCGCTGC GGAGCCCGGC GAATTCACCC GGCGGGCGTT CGAGAACGGC AAGCTCGACC TCACCGAAGC CGAAGGGCTC GACGATCTGA TCCACGCCGA CACCGAGCGG CAACGCCGCC AGGCGCTGCG GCAGTTGCAG GGCCTGCTCG GCGACAGAGC GCGCGACTGG CGCGGAGAGA TCATCGCGGC GTCGGCGCTG GTGGAAGCCG CGATCGATTT TGCCGACGAG GGCGACGTGC CGGACGAATT GATCGCGCCG GCCAAGGCCA AGATCGAAAT CCTGCTCGAC GAGATCGAAG ACGTGCTGGC GCAGGAGGGC CGCAGCGAAA AGCTGCGCGA CGGCTTGGTG GTGGCGATCA CCGGGCCGCC GAATGTCGGC AAGTCCACGC TGATGAACCA GCTGGCGCGG CGCGAGGTGG CGATCGTGTC GCCGCATGCC GGCACCACGC GCGATATCAT CGAGGTGCAT CTCGATCTCG ACGGCTATCC GGTGACGGTG ATCGACACCG CCGGGATCCG CGAGGCGATC GACCCGGTCG AGCAGGAGGG CGTGCGCCGC GCCAGGAGCC GCGCCGCCGA GGCCGATCTG CGGCTGTGGC TGGTGGATGC GCAGGCGGCG GGCGACGGCG AGGACGCGTT GCGGGCCTGG ATGGCGCAGG GTCAGAACGG CTTCTGGGTG GTGCGCAACA AGGTCGACGT GGCGGGCGAG CCGACGGGCG AGCTATCGGC CACCGGCTGG CCGTGCTTTT CGATCTCCGC GGCGAATGGC CGCGGCGTGG CGGAATTGAT CGCGGCGCTG GGAAAATTCG CCGCGGCGCA TCTTGGCGGG GAGTCGGCGT TGATCACCCG CGCCCGGCAC CGCGACTTGT TGCGGCAGAC CGCCGACGCG CTGGGGAGGG CGATCGACCT GCCGGAACAG GTCGAGTTGA TCGCGGAGGA GTTGCGGATT GCAGCGCACC GGCTCGGGCA ATTGCTCGGC CGGGTCGACG TCGAGGATAT CTTGGACGTG ATCTTCCGGG AGTTTTGTGT CGGGAAGTAA
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Protein sequence | MHSRQQTIFA LSSGRPPAAL AIVRVSGPEA AIVLERIAGR LPPPRQAMRA LLHDASAQPI DDAIVLWFPA PRSATGEDVA EFHIHGGRAV LSAVIAAIGT NENLRAAEPG EFTRRAFENG KLDLTEAEGL DDLIHADTER QRRQALRQLQ GLLGDRARDW RGEIIAASAL VEAAIDFADE GDVPDELIAP AKAKIEILLD EIEDVLAQEG RSEKLRDGLV VAITGPPNVG KSTLMNQLAR REVAIVSPHA GTTRDIIEVH LDLDGYPVTV IDTAGIREAI DPVEQEGVRR ARSRAAEADL RLWLVDAQAA GDGEDALRAW MAQGQNGFWV VRNKVDVAGE PTGELSATGW PCFSISAANG RGVAELIAAL GKFAAAHLGG ESALITRARH RDLLRQTADA LGRAIDLPEQ VELIAEELRI AAHRLGQLLG RVDVEDILDV IFREFCVGK
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