| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0259 |
|---|
| Symbol | |
|---|
| ID | 3971130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 273090 |
|---|
| End bp | 275438 |
|---|
| Gene Length | 2349 bp |
|---|
| Protein Length | 782 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637923372 |
|---|
| Product | RNA binding S1 |
|---|
| Protein accession | YP_530153 |
|---|
| Protein GI | 90421783 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.304866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAATA TCAGTCGACA GATCGCGGAA GAGCTCGGCG TGCGCGAGCA GCAAGTGCAG
GCCGCGGTCG ACCTGCTCGA CGGCGGCGCC ACCGTGCCGT TCGTCGCGCG CTATCGCAAG
GAAGCCACCG GCGCGCTCGA CGACGCGCAA TTGCGCACGC TTGAGGAACG GCTGAACTAT
CTGCGCGAAT TGGAAGAACG CCGAAGTGCT ATTCTCAATT CGGTGCGCGA ACAGGGCAAG
CTCGACGCGA CGCTCGAAGC CGCGATCATG GCCGCCGACA GCAAGGGCCG GCTCGAAGAT
ATCTATCTGC CGTTCAAGCC GAAGCGCCGC ACCAAGGCCG AGATCGCCCG CGAGGCTGGC
CTCGCGCCGC TCGCCGAGAT GCTGCTGACG CAGCCGGACA ATGATCCGCA GGCTGTTGCC
GCGCCGTTCG TCGACGCCGA CAAGCAGGTC GCCGATGTCG CAGCCGCGCT TGACGGCGCG
CGCGCGATTC TGGTCGAGCG CTTCGCCGAA GACGCCGACC TGATCGGCTC GTTGCGCGAG
CTGATGTGGT CGAACGGCGT GATGCTGTCG AAGCAGCGCG ACAACAAGAA GGACGACGGC
GCGAAATTCT CCGATTACTT CGATTTCTCC GAGCCGTTGC ACAAATTGCC GTCGCACCGG
ATTCTGGCGA TGTTCCGCGG CGAAAAGGAA GAAGTGCTCG ACCTCTCGAT CCAGCCCGAG
GTGGTGCCCG CGGGGACCGC GCCGGCGCCG GTCGGCTCTT ACGAACTACG CATCATGAAT
CGATTCGCGG TGAGCGATCG CGGCCGCCCC GGCGACCGCT GGCTGATCGA CACCGTGCGC
TGGGCCTGGC GCACCAAGAT TCAGGTGCAT CTCAACATCG ACCTGCGGAT GCGGCTGTGG
ACCGCCGCCG AGCAGGAAGC GGTGCGGGTG TTCGCCTCCA ATCTGCGCGA TCTGTTGCTG
GCGGCGCCGG CCGGCGCGCG TACCACGATG GGGCTCGATC CGGGCTTCCG CACCGGCGTC
AAGGTCGCGG TGGTCGACGC CACCGGCAAG GTGGTGGCTA CCACGGCGAT CTTCCCGCAC
GAGCCGCAGC GACGTTGGGA CGAAGCCTTG GCGATCCTCG GCAAGCTCGC CCGCGAGCAC
CGCGTCGAAC TGATCTCGAT CGGCAACGGC ACCGCCTCGC GCGAGACCGA CAAGCTCGCC
ACCGAACTGG TGAAGCTCTT GCCGGAACTG AAAATGTCCA AGATCGTGGT GTCGGAAGCC
GGCGCCTCGG TGTATTCGGC CTCCGCCTTT GCCTCGGAGG AATTGCCCGA GCTCGACGTC
ACGCTGCGCG GCGCGGTGTC GATCGCCCGC CGGCTGCAGG ATCCGCTCGC TGAACTCGTC
AAGATCGATC CGAAGTCGAT CGGGGTGGGC CAATATCAGC ACGACCTCGG CGAGGCGAAA
CTGTCGCGCT CGCTGGATGC CGTGGTGGAA GACTGCGTCA ACGCGGTCGG CGTCGACGCC
AACACCGCCT CGGCGCCGCT GCTGGCGCGC GTCTCGGGCA TCGGTGCCGG ATTGGCGCAA
TCCATCGTGC AGCATCGCGA CGCCAACGGC CCGTTCGATT CGCGCAGCGC CTTGAAGAAG
GTGCCGCGGC TCGGCCCGAA GGCGTTCGAG CAATGCGCGG GCTTCCTGCG CATTCAGAAT
GGCAAGGACC CGCTCGATGC GTCGGGCGTG CATCCGGAGG CCTATCCGGT GGTGCGCAAG
ATTCTCGAAG CCACCAAGAG CGACATCAAG GCGCTGATCG GCAACGCCGA GGCGCTGCGC
CAGGTGCAGC CGAAGAACTT CGTCGACGAG CATTTCGGCC TGCCGACGGT GACCGACATT
TTGCGCGAAT TGGAAAAGCC CGGCCGCGAT CCGCGTCCGG CGTTCAAGGC CGCGGTGTTC
ATGGAAGGCG TCGAGACCCT GAAGGACCTG AAGCCCGGCA TGGTGCTGGA AGGTGCTGTC
ACCAACGTCG CGGCGTTCGG CGCCTTCGTC GACATCGGCG TGCACCAGGA TGGTCTCGTC
CACATCTCGG CAATGTCGCG CAGCTTCATC AAGGATCCGC GCGAGGTGGT GAAGCCCGGC
GACATCGTCA AGGTCAAGGT GCTCGAGGTC GACGTCGCGC GCAAGCGCAT CGCGCTCAGC
CTGCGGCTCG ACGACGAGGT CGGCGCCAAG GCCGACCGCG TCCAGGCGGC ACCGCGCGGG
CCCAGCCGCT CCACAGTGGC CGCCTATGCG CCGAAGAAAC AGCAGCCGTC CACCGGCGGC
GGCGCGTTCG CCGAAGCCTT TGCGCGCGCC AACGAGAAGG GCAAGCCCGA CAAGCCGGGG
CGGCGCTAA
|
|---|
| Protein sequence | MANISRQIAE ELGVREQQVQ AAVDLLDGGA TVPFVARYRK EATGALDDAQ LRTLEERLNY
LRELEERRSA ILNSVREQGK LDATLEAAIM AADSKGRLED IYLPFKPKRR TKAEIAREAG
LAPLAEMLLT QPDNDPQAVA APFVDADKQV ADVAAALDGA RAILVERFAE DADLIGSLRE
LMWSNGVMLS KQRDNKKDDG AKFSDYFDFS EPLHKLPSHR ILAMFRGEKE EVLDLSIQPE
VVPAGTAPAP VGSYELRIMN RFAVSDRGRP GDRWLIDTVR WAWRTKIQVH LNIDLRMRLW
TAAEQEAVRV FASNLRDLLL AAPAGARTTM GLDPGFRTGV KVAVVDATGK VVATTAIFPH
EPQRRWDEAL AILGKLAREH RVELISIGNG TASRETDKLA TELVKLLPEL KMSKIVVSEA
GASVYSASAF ASEELPELDV TLRGAVSIAR RLQDPLAELV KIDPKSIGVG QYQHDLGEAK
LSRSLDAVVE DCVNAVGVDA NTASAPLLAR VSGIGAGLAQ SIVQHRDANG PFDSRSALKK
VPRLGPKAFE QCAGFLRIQN GKDPLDASGV HPEAYPVVRK ILEATKSDIK ALIGNAEALR
QVQPKNFVDE HFGLPTVTDI LRELEKPGRD PRPAFKAAVF MEGVETLKDL KPGMVLEGAV
TNVAAFGAFV DIGVHQDGLV HISAMSRSFI KDPREVVKPG DIVKVKVLEV DVARKRIALS
LRLDDEVGAK ADRVQAAPRG PSRSTVAAYA PKKQQPSTGG GAFAEAFARA NEKGKPDKPG
RR
|
|---|
| |