| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0246 |
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| Symbol | |
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| ID | 3971117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 260219 |
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| End bp | 261025 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637923359 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_530140 |
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| Protein GI | 90421770 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0330322 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAGG ATCTGTTTTC GTTGCAGGGC CGGGTGGCGC TGATCACCGG CGGTTCGCGC
GGCATCGGCA AGATGATCGC CGCCGGCTTT CTCGCTCAGG GTGCGGCGCG CGTCTATATC
ACCGCGCGCA AGGCCGCACC CTGCGAGGCC ACCGCGCAAG AACTCACCGC GCAATATCAA
GGCGAGTGCA TCGCGCTGCC GATCGACATT TCCACCCTGG CCGGCATCGC GCTGTTGGCC
GCCGAAATCG CCAAGCGCGA GCCGAGGCTC GACATCCTGG TCAACAACGC CGGCGCGGCC
TGGGGCGCCG ATTTCGACGA GTTTCCGGAA AGCGGCTGGG ACAAGGTGGT CGACCTCAAC
CTGAAGACGC CGTTCTTTCT CACCAAGGCG CTGCACGCGC CGCTGCGCGC CGCCGCCAGC
CGCGAGCGGC CCGGCAAGGT GATCAACATC GCCTCGATCG ACGGCATCTT CGTCAACCCG
CTGGAGACCT ATCCCTACGC CGCCAGCAAG GCCGGGCTGA TCCATCTGAC GCGGCGGATG
GCGGTGCGCC TGATCAAGGA CCACGTCGTG GTCACCGCGA TCGCGCCGGG GCCGTTTTCC
TCCGACATGA ACAAGGCGGC GCGCGACAAC GCCGACGCGG TGGCGGCGCG GGTGCCGGCG
GGGCGCATCG GCAGCGACGA GGACATGGCG GGGGCGGCGA TCTATCTCGC CTCGCGCGCC
GGCGACTACG TGGTCGGCGC CACGCTCGCG GTCGACGGCG GCATCGTCTA CGCCAATCCG
GGCTTCCAGG GCGAGGGCTG GGACTGA
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| Protein sequence | MFKDLFSLQG RVALITGGSR GIGKMIAAGF LAQGAARVYI TARKAAPCEA TAQELTAQYQ
GECIALPIDI STLAGIALLA AEIAKREPRL DILVNNAGAA WGADFDEFPE SGWDKVVDLN
LKTPFFLTKA LHAPLRAAAS RERPGKVINI ASIDGIFVNP LETYPYAASK AGLIHLTRRM
AVRLIKDHVV VTAIAPGPFS SDMNKAARDN ADAVAARVPA GRIGSDEDMA GAAIYLASRA
GDYVVGATLA VDGGIVYANP GFQGEGWD
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