| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0245 |
|---|
| Symbol | |
|---|
| ID | 3971116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 258610 |
|---|
| End bp | 260124 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637923358 |
|---|
| Product | malonyl-CoA synthase |
|---|
| Protein accession | YP_530139 |
|---|
| Protein GI | 90421769 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0395238 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTA ATCTGTTCGC CCAACTGTTC GACGGCCTCG AGGATCCGGC AAGGCTCGCG
ATCGAGACCG AGGATGGCGG CCGGATCAGC TATGGCGATC TGATGAGCCG CGCCGGGCGG
GTGGCCAACG TGCTGGTCGC GCGCGGCGTC AAGATCGAAG ACCGCGTCGC GGCGCAAACC
GAAAAGTCCG TGGCAGCGCT GGTGCTGTAT CTCGCCACCG TGCGCATCGG CGCGGTCTAT
CTGCCGCTCA ATACCGCGTA CACGCTCAAC GAACTGGATT ATTTCATCAC CGACGCCGAG
CCGTCGCTGG TGGTGTGCGA TCCGGCGAAG CGGGATGGCA TCGCGGCGAT CGCCGCCAAG
GTCGGCGCGG CGGTGGAGAC GCTCGGCGCC GACGGCGAAG GCTCGCTGAC CGAGGCATCG
GCCGCCGCCG CGCCGGCGTT CGAGACCGTC AAGCGCGCCG GCGGTGATCT CGCGGCGATC
CTCTACACTT CAGGAACGAC CGGGCGCTCC AAGGGCGCGA TGCTGACGCA CGACAATCTG
GCCTCGAATT CGAAAACGCT GGTGGATTAT TGGCACTTCA CCGACAAGGA CGTGCTGATC
CACGCGCTGC CGATCTATCA CACCCACGGG CTGTTCGTGG CCAGCAACGT CACGCTGTTC
GCCCGCGCAT CGATGATCTT CCTGCCGAAG CTCGATCCGG AGCGGATCAT CACCTTGATG
GCGCGCGCCA CCGTGCTGAT GGGGGTGCCG ACCTTCTATA CCCGGATGTT GCGGAGCGAG
CGACTGACCC GGGAGGCGAC CGGCCACATG CGGCTGTTCA TCTCCGGCTC GGCGCCTCTC
CTCGCCGACA CCCATCGCGA ATGGGCGGCG CGCACCGGCC ACGCCGTGCT GGAGCGCTAC
GGCATGACCG AGACCAACAT GAATACGTCC AACCCCTATG AGGGCGTCCG GCTGCCGGGC
TCGGTCGGCC CGGCGCTGCC CGGCGTCGAT GCGCGGGTGG TCGACGCGGT CAGCGGTGTC
GAGCTGCCGC GCGGCGAGAT CGGCATGATC GAGGTCAAAG GCCCCAACGT GTTCAAGGGC
TATTGGCGGC TGCCGGAAAA GACCAACGCC GAATTCCGTC ACGACGGCTA CTTCATCACC
GGCGATCTCG GCACGATCGA CGACAACGGC TACGTCTCCA TCCTCGGTCG CGGCAAGGAT
CTGGTGATCA CCGGCGGCTT CAACGTCTAT CCGAAAGAAG TCGAAAGCGA GATCGACGCG
CTGCCGGGCG TGCTGGAATC CGCGGTGATC GGCGTGCCGC ATGCCGATCT CGGCGAGGGC
GTCACCGCGA TTGTGGTGCG CGAGCAGGGC GCCGATTGCA GCGAGGCGAC GGTGCTCGGC
GCGCTCGAGG GACAGATCGC CAAATTCAAG ATGCCGAAGC GGGTGATGTT CGTCGACGAG
CTGCCGCGCA ACACCATGGG CAAAGTGCAG AAGAACCTGC TGCGCGAGAC CTATGCCAAT
CTCTACGCCA AGTAA
|
|---|
| Protein sequence | MNANLFAQLF DGLEDPARLA IETEDGGRIS YGDLMSRAGR VANVLVARGV KIEDRVAAQT
EKSVAALVLY LATVRIGAVY LPLNTAYTLN ELDYFITDAE PSLVVCDPAK RDGIAAIAAK
VGAAVETLGA DGEGSLTEAS AAAAPAFETV KRAGGDLAAI LYTSGTTGRS KGAMLTHDNL
ASNSKTLVDY WHFTDKDVLI HALPIYHTHG LFVASNVTLF ARASMIFLPK LDPERIITLM
ARATVLMGVP TFYTRMLRSE RLTREATGHM RLFISGSAPL LADTHREWAA RTGHAVLERY
GMTETNMNTS NPYEGVRLPG SVGPALPGVD ARVVDAVSGV ELPRGEIGMI EVKGPNVFKG
YWRLPEKTNA EFRHDGYFIT GDLGTIDDNG YVSILGRGKD LVITGGFNVY PKEVESEIDA
LPGVLESAVI GVPHADLGEG VTAIVVREQG ADCSEATVLG ALEGQIAKFK MPKRVMFVDE
LPRNTMGKVQ KNLLRETYAN LYAK
|
|---|
| |