| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0224 |
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| Symbol | trmD |
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| ID | 3971173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 241867 |
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| End bp | 242622 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637923337 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_530118 |
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| Protein GI | 90421748 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00794732 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCAAAG CCATGAGCTG CGAACCGACC CCCTGGCGCG CCACCGTGCT GACGCTGTTT
CCCGAGATGT TTCCCGGCCC GCTCGGCGTC AGCCTGGCCG GCCGCGCGCT GGCGACCGGC
TTGTGGGCGC TGGAAGTCCG CGACATCCGC GACAGCGCCA CCGACAAGCA CCGCAGCGTC
GACGACACCC CGGCCGGCGG CGGCCCCGGC ATGGTGCTGC GCGCCGACGT GCTGGCGGCG
GCGATCGATG CGGCTGACGC CGGCGAAACC CGTCCGCGGC TGGTGATGAG CCCGCGCGGC
CGGCCGCTCA CCCAAGCGAA GGTCGCGGAG CTCGCGGCCG GGCCGGGGCC GCTGATCGTC
TGCGGCCGTT TTGAGGGGAT CGACCAGCGG GTGATCGACG CCCGCGATCT CGAAGAAGTG
TCGATCGGCG ACTATGTGCT GTCCGGCGGC GAGATCGCCG CATTGGCGCT GCTCGATGCC
TGCGTGCGGC TGTTGCCGGG GGTGATGGGC AAGCAGGGCT CGGCGCTGGA GGAGAGTTTT
TCCGACGGCC TGTTGGAATA TCCGCAATAC ACCCGGCCGC AACTGTTCGA GGAACGGCCG
ATCCCGGAGA TTTTGACCTC TGGCGATCAC GCCAAGGTCG CGGCCTGGCG CCGCGCCGAG
GCGGAAAAGC TCACCCGAGC CCGCCGACCG GACCTGTTCG CCACGCGACC GCAACCGAAT
CGCCAAAAAC CGCCAAAAAA CACGACGGAC GGGTGA
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| Protein sequence | MSKAMSCEPT PWRATVLTLF PEMFPGPLGV SLAGRALATG LWALEVRDIR DSATDKHRSV
DDTPAGGGPG MVLRADVLAA AIDAADAGET RPRLVMSPRG RPLTQAKVAE LAAGPGPLIV
CGRFEGIDQR VIDARDLEEV SIGDYVLSGG EIAALALLDA CVRLLPGVMG KQGSALEESF
SDGLLEYPQY TRPQLFEERP IPEILTSGDH AKVAAWRRAE AEKLTRARRP DLFATRPQPN
RQKPPKNTTD G
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