| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0215 |
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| Symbol | dapF |
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| ID | 3971164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 233732 |
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| End bp | 234598 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637923328 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_530109 |
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| Protein GI | 90421739 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.388683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0159433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGAAT TGGCAAACCG CAGCTTCAGC AAGATGAACG GCATCGGCAA CGAAATCGTC
GTGCTCGATC TACGCGACCA CCCGGTCGCG GTCAGCGCCG CCGATGCCCG CGCGATCGCC
TCGGAGGTGC CGTACGATCA GCTGATGGTG TTGCAGCCGC CGCGCACCCC CGGCACCGAG
GCCTTCGTGC GGATCTACAA CAATGACGGC TCGGAATCCT CGGCCTGCGG CAACGGCATG
CGCTGCGTCG CGCGGCAGGT GTTCGCGACC TCGGCCAGCG ACGCGCTGAC CTTCGAGACC
CGGGCCGGCT TGTTGAATTG CTGGCGTCCG GCGCCCAATC TTTACACCGT CGACATGGGG
CCGCCGAAGC TCGGCTGGAA AGACATCCCG CTGGCGGAAG AATTTCGCGA CACCCGGTCG
ATCGAATTGC AGATCGGTCC GATCGACGCG CCGGTGCTGC ACACCCCGTC GGTGGTCAGC
ATGGGCAATC CGCACGCCAT CTTCTGGGTC GACGACGTCA ATGCCCACGA TCTCGCGCGT
TTCGGGCCGC TGCTGGAGAA CCACCCGATC TTTCCGGAGC GCGCCAACAT CACGCTGGCG
CAGATCGTCG ATCGCGACCA CATCGTGATC CGCACCTGGG AGCGCGGCGT CGGCTTGACC
AAAGCCTGCG GCTCGGCGGC CTGCGCCACC GCGGTCGCCG CGGCCCGGCT GCGGCGCGTC
AACCGCGTCG TGCACATCAC GCTGCCCGGC GGCGAACTCG GCATCGAATG GCGCGCAAGC
GACGACCACG TGCTGATGAC CGGCCCGGCG GCGTTCGAAT TCGAAGGCCG CTTCGATCCG
GCGGTGTTCG CCGCTGCTGC TTCGTGA
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| Protein sequence | MNELANRSFS KMNGIGNEIV VLDLRDHPVA VSAADARAIA SEVPYDQLMV LQPPRTPGTE
AFVRIYNNDG SESSACGNGM RCVARQVFAT SASDALTFET RAGLLNCWRP APNLYTVDMG
PPKLGWKDIP LAEEFRDTRS IELQIGPIDA PVLHTPSVVS MGNPHAIFWV DDVNAHDLAR
FGPLLENHPI FPERANITLA QIVDRDHIVI RTWERGVGLT KACGSAACAT AVAAARLRRV
NRVVHITLPG GELGIEWRAS DDHVLMTGPA AFEFEGRFDP AVFAAAAS
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