| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0108 |
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| Symbol | |
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| ID | 3971328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 124109 |
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| End bp | 124873 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637923224 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_530006 |
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| Protein GI | 90421636 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0592411 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCG AGCAGAATGA GCCGGGCGAT CGCCCGGGCG GCAAGGTGGT CCTGGTCACC
GGCGGCGCGC GCGGCATCGG CGCCGGCGTC GCCCGCCGCT TCGCCGGCGC GGGCTGCCGC
GTGGCGATCG CCTCGCGTAG CGCCAGCCCC GCCGCCGCAG CGGTGCTGGC AGAGATCGAA
GCGCTCGGCG CGCAAGGCAT CGCGGTGGCG GGGGATATTT CGAATAGCGA GGATGCGCGC
GCCATGGTGG GCGAGGTGGT CGCGCGATTC GGCCGGATCG ATGTGCTGGT GAATTGCGCC
GGCGTCGCCG AGTATCGGGC ATTCGAGGCG ACTGACCTCG CGATGTTCCG TGCGACGTTC
GACACCAACG TGTTCGGAAC CGTGGCGATG ATTCAGGCCG CACTTCCTCA CCTGACCGCG
CCCGGCGGCC GCATCATCAA TTTCTCATCG GCACTCGCGA CCCGGCCGAT TCCCACCGCC
TCGATCTACG CGGCCTCCAA GGCCGCGGTG TCGGCGCTGA CCCATGCGCT GGCGAAGGAA
TTCGGACCGC GCGGCATCAC CGTCAATGCG ATCGCGCCGG GCGTGATCGA GACCGAGATG
ACCGCGGCGA TTCTGGCCGA GCGCGGCGCT GCTATCAAGG CGATGACGCC GCTCGGCCGC
ATCGGCCAGA CCGACGACGT CGCCGGCCTG GCGTTGTTCC TGGCGTCGCA CGACGCGGGC
TGGCTGACCG GGCGCACCAT CATCGCCGAT GGCGGCGTGA GCTGA
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| Protein sequence | MSGEQNEPGD RPGGKVVLVT GGARGIGAGV ARRFAGAGCR VAIASRSASP AAAAVLAEIE
ALGAQGIAVA GDISNSEDAR AMVGEVVARF GRIDVLVNCA GVAEYRAFEA TDLAMFRATF
DTNVFGTVAM IQAALPHLTA PGGRIINFSS ALATRPIPTA SIYAASKAAV SALTHALAKE
FGPRGITVNA IAPGVIETEM TAAILAERGA AIKAMTPLGR IGQTDDVAGL ALFLASHDAG
WLTGRTIIAD GGVS
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