| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0084 |
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| Symbol | |
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| ID | 3971341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 94303 |
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| End bp | 96318 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637923200 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_529982 |
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| Protein GI | 90421612 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.380129 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCCC GTTTCCACGC CGCATCGCGG CCGCACCGGC GTTTTCACGC CATGCTGGCG
AGTAGCTGTC TGATGCCGAT GCTGTCGCTC GCCACGGGAG TTGCCCAGGC GCAACAGCAG
TCCACCACGC TGCCGACCAT CGTGGTCAGT CCCACCGGCC TCGCGACCCC GGTCGACCAG
ATCGCCAGCT CGGTGACCGT GATTTCCGCA GCCGACATCG AACGCGACCA GCGGCGCACG
GTCGGCGACG CGCTGACCAT GGTTCCGGGG TTGAACGTGG TGCGCACCGG CGGCTCGGGC
GGTTTGACGT CGGTCTTCAT GCGCGGCACC AACTCCAACC ACGTCAAGGT GCTGATCGAC
GGCATCGATG CCGGCGATCC CAGCAAGCCG AGCGGCGCTT ATGATTTTGC CAATCTTTTG
ACGGCGGACA TCGAACGCAT CGAAGTGCTG CGCGGACCGC AAAGCGGCCT CTACGGCTCC
GACGCGATCG GCGGCGTGAT TTCGATCACC ACCAAGCGCG GGCAGGGGCC GGCCAAGCTG
ACCGGCATGG TGGAGGGCGG GTCGTTCGGC ACGTTCAATC AGACGGCCCG CGCCGCCGGC
TCCGACGGCA ATTTCGATTA CGCCTTCAAC GTCGCGCATT ATCGCTCGAC CGAGGTGGCG
GTGACGCCGC TCGATCTGCT CGCGCCGGGC CAGAAGCGAA ACAACGACAT CTACGACAAC
CTGAGCTACT CGACCAAGCT CGGCCTCCAG GCCAGCGACG ATCTCGCCTT CAACTTCGTC
GGCCGCTACA CCGATGCGCA TAAGGGTTTC ACGGGGGACG ATTCGTCCCA CTGGCCGAAC
TCGTTTCCCG AAGTGCTGCA GAGCACCACG GCCAGCCGCG ATCTGCTGAC CCGTAGCGAA
GCCGTCTGGT CGCCGCTGGA TGGCCGGTTC AAGAGCACGC TCGGCGTCAG CTATTCCAAC
CTGTGGAATC GCACCAACAA TCCCAATCCG GATTATCCGA TCAGCTACAC GAGCTATGGG
GTCGGTCCGG CGACGTTCTA CCGCGGCGAG CGGACCAAGG TCGATTGGAA CGGCGTGGTC
GATGCGGGCT ATGGACAAAA GATCGTGCTC GGGGCCGAAC GCCAGGACGA CAAAATTCAC
ACCGATTCGG TCGGCGGATA CGATCTGCTC GGCAATTACC AGCAGAGCAT GACGACGGCC
AGCACCGGCG ACAGCGCCGG CTTCGTCGAA TTGCAATCGG CCTTCACCAA CAACTTCTTC
CTGGTCTCCA ACGTCCGCTA CGACGACAAC GACAGTTTCG GCGGGCACAC CACTTGGCGG
GTGGCGCCGA CGTTCATTCT GCCGCTGACC GAGACCAAGC TGAAGGCGAC TTACGGCACC
GGCTTCAAGG CGCCGACGCT GATGCAGCTT TACGTCAACA CGCCCTATAC GATTGCCAAT
CCGGCGTTGC GGCCGGAGAC CAGCAAGGGT TTCGACGTCG GATTCGAGCA GCCGCTGTTC
CACAACCGCG TCAGTTTCGG CGCCACCTAC TTCAATAACG AGATCGAGAA TCTGATTGAG
AACTCCGTCG TGTCCGGCCA ATGGACCTAT GACAACGTCG GCCTCGCCAA GACTTACGGG
GTGGAATCCT TCGTCGCGCT GCAGGCGACC GAAACCCTGC GGTTTCGCGC CGATTACACC
TACACGCAGA CCCGCGACGA AAAAACCGGG CAGCGGCTGC GGCGTCGCCC CGACAATAAG
GTGACACTCG CGGCGATCTG GAACCCGATC GAGCGCGCGA TGGTCTCGGC CTCGATCGTT
CATACCAGTT CGTGGCTCGA CTACGACCGG TTCGGCACCG CGCTGCTCGA CGCCCCGGCC
TTCACCACCG TCAACCTCGC CGCCAATTAC ACGATCGACC AGCACGTCAC GGTGTTCGGT
CGCATCGACA ATCTGTTCGA CAAAACCTAC GAGGTGCCGG TGGGCTTCCT GCAGCCCGGC
ATCGGCGTTT TTGCCGGCGT TCGTTTGACC AATTAG
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| Protein sequence | MSSRFHAASR PHRRFHAMLA SSCLMPMLSL ATGVAQAQQQ STTLPTIVVS PTGLATPVDQ
IASSVTVISA ADIERDQRRT VGDALTMVPG LNVVRTGGSG GLTSVFMRGT NSNHVKVLID
GIDAGDPSKP SGAYDFANLL TADIERIEVL RGPQSGLYGS DAIGGVISIT TKRGQGPAKL
TGMVEGGSFG TFNQTARAAG SDGNFDYAFN VAHYRSTEVA VTPLDLLAPG QKRNNDIYDN
LSYSTKLGLQ ASDDLAFNFV GRYTDAHKGF TGDDSSHWPN SFPEVLQSTT ASRDLLTRSE
AVWSPLDGRF KSTLGVSYSN LWNRTNNPNP DYPISYTSYG VGPATFYRGE RTKVDWNGVV
DAGYGQKIVL GAERQDDKIH TDSVGGYDLL GNYQQSMTTA STGDSAGFVE LQSAFTNNFF
LVSNVRYDDN DSFGGHTTWR VAPTFILPLT ETKLKATYGT GFKAPTLMQL YVNTPYTIAN
PALRPETSKG FDVGFEQPLF HNRVSFGATY FNNEIENLIE NSVVSGQWTY DNVGLAKTYG
VESFVALQAT ETLRFRADYT YTQTRDEKTG QRLRRRPDNK VTLAAIWNPI ERAMVSASIV
HTSSWLDYDR FGTALLDAPA FTTVNLAANY TIDQHVTVFG RIDNLFDKTY EVPVGFLQPG
IGVFAGVRLT N
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