| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0070 |
|---|
| Symbol | sdhA |
|---|
| ID | 3971403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 78963 |
|---|
| End bp | 80786 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637923186 |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
|---|
| Protein accession | YP_529968 |
|---|
| Protein GI | 90421598 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.563767 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCGA ACGGCAACGG CGCGCCGGCC ATCAACGGCC ACGCCTATCC CATTGAAGAC
CACAGCTACG ACGTCGTCGT GGTGGGCGCC GGCGGCGCCG GTCTGCGCGC CGTGGTCGGC
TGCAGCGAGG CCGGCTTGCG CACCGCCTGC ATCACCAAGG TGTTTCCGAC CCGCTCCCAC
ACCGTGGCGG CGCAGGGCGG CATCTCGGCC GCGCTCGGCA ATATGCACAA GGACGACTGG
CGCTGGCACA TGTACGATAC CGTCAAGGGA TCGGACTGGC TCGGCGACCA GGATTCCATC
GAATACATGG TGCGCAACGC GCCGCAGGCG GTCTACGAGC TGGAACATTG GGGCGTGCCG
TTCTCGCGCA CCGACGACGG CAAGATCTAT CAGCGCCCGT TCGGCGGCAT GACGCTGGAC
TACGGCAAGG GCCAGGCGCA GCGCACCTGC GCCGCCGCCG ATCGCACCGG CCACGCCATG
CTGCACACCA TGTACGGCCA GGCGCTGCGG CATTCCGCCG AATTCTACAT CGAGTTCTTC
GCCATCGATC TGATCATGGA CGATCAGGGC GTCTGCCGCG GCGTCATCGC GCTGAAGCTC
GACGACGGCA CGCTGCATCG CTTCAAGGCG CAGACCACGA TTCTCGCCAC CGGCGGCTAC
GGCCGCGCTT ACGCGTCCTG CACGTCGGCG CATACTTGCA CCGGCGACGG TGGCGCGATG
GCGTTGCGCG CCGGGGTGCC GCTGCAGGAC ATGGAGTTCG TCCAGTTCCA CCCGACCGGG
ATCTACGGCT CGGGCTGCCT GGTCACCGAA GGCGCCCGCG GTGAGGGCGG TTATCTGGTG
AATTCCGAAG GCGAGCGCTT CATGGAACGC TACGCGCCCT CCGCCAAGGA TCTGGCGTCG
CGCGACGTGG TGTCCCGCGC GATGACCATC GAGATCCGCG AAGGCCGCGG CGTCGGCAAG
AAGAAAGACC ACATCTTCCT GCACCTCGAT CATCTCGATC CCAAGGTGCT GCACGAGCGG
CTGCCGGGCA TTTCGGAATC GGCGCGGATC TTCGCCGGCG TCGACGTCAC CCGCGAGCCG
ATCCCGATGA TTCCGACCGT GCACTACAAT ATGGGCGGCA TCCCGACCAA TTATCACGGC
GAAGTGGTCA CCAAGAAGGA CGGCGACGAC AACGCCGTGG TGCATGGCCT GATGGCGCTC
GGCGAGGCGG CTTGCGTCTC GGTGCACGGC GCCAACCGGC TCGGCTCCAA TTCGCTGATC
GACCTCGTGG TGTTCGGCCG CGCCGCGGCG CTGCGCTGCG CCGAGAAGCT GACCCCGAAC
GGCAAGCAGC CGGAACTGCC GGCGGACTCC GCCGAGCAGT CGCTGACCCG GCTCGACCGC
TATCGCTACG CCTCGGGCGG CACGCCCACG GCACGCTTGC GCGAAAACAT GCAGCACGTG
ATGCAGAACA ATTGCGCGGT GTTCCGCACC GGCGAAGTGC TGCAGGAAGG CAAGGGCCTG
ATCCACAACG TGCACAGCGG CATCTCCGAC ATCCACGTCA CCGACCGCTC GCTGATCTGG
AATTCCGATC TGATCGAGAC TTTGGAATTC GACAATCTGA TCGTGCAGGC GGTGGTGACG
ATGGACTCCG CCGCCAACCG CACCGAGAGC CGCGGCGCCC ATGCCCGCGA GGATTTCTCG
GCGCGCGACG ACAAGAACTG GATGAAGCAC ACGTTGGCGT GGATGGATCA CAGTGGCGAG
ACCACGATCG ATTACCGCCC GGTGCACGAC TACACCATGA CCAACGACGT GCAGTACATC
CCGCCGAAGG CGCGGGTGTA CTGA
|
|---|
| Protein sequence | MAANGNGAPA INGHAYPIED HSYDVVVVGA GGAGLRAVVG CSEAGLRTAC ITKVFPTRSH
TVAAQGGISA ALGNMHKDDW RWHMYDTVKG SDWLGDQDSI EYMVRNAPQA VYELEHWGVP
FSRTDDGKIY QRPFGGMTLD YGKGQAQRTC AAADRTGHAM LHTMYGQALR HSAEFYIEFF
AIDLIMDDQG VCRGVIALKL DDGTLHRFKA QTTILATGGY GRAYASCTSA HTCTGDGGAM
ALRAGVPLQD MEFVQFHPTG IYGSGCLVTE GARGEGGYLV NSEGERFMER YAPSAKDLAS
RDVVSRAMTI EIREGRGVGK KKDHIFLHLD HLDPKVLHER LPGISESARI FAGVDVTREP
IPMIPTVHYN MGGIPTNYHG EVVTKKDGDD NAVVHGLMAL GEAACVSVHG ANRLGSNSLI
DLVVFGRAAA LRCAEKLTPN GKQPELPADS AEQSLTRLDR YRYASGGTPT ARLRENMQHV
MQNNCAVFRT GEVLQEGKGL IHNVHSGISD IHVTDRSLIW NSDLIETLEF DNLIVQAVVT
MDSAANRTES RGAHAREDFS ARDDKNWMKH TLAWMDHSGE TTIDYRPVHD YTMTNDVQYI
PPKARVY
|
|---|
| |