Gene RPC_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_0001 
SymboldnaA 
ID3969426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp758 
End bp2179 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content66% 
IMG OID637923115 
Productchromosomal replication initiation protein 
Protein accessionYP_529899 
Protein GI90421529 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.884369 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAACA TCGAACAGGA TCGCTGGTCA CGGGTTAAGG GCCGCTTGCG CTCAAGCGTC 
GGTGAAGACG TTTACTCGAG CTGGTTCGCC CGGATGGATC TGGAAAGCGT GCAGCCCGAA
AGCGTGCACC TGTCGGTCCC GACGCGATTC CTGAAGAGCT GGATCCAGAC GCATTATTCC
GATCGCGTGC TGAGCTGCTG GCAGGCCGAG ATGCCGCAGG TGCATCGCGT CGACCTCACC
GTGCGCACCG CGATGCGCTG TGCCGCGCCC GCCAAGGACG CGCCGGCGCA CGCCGAGCCG
CGCCGCGACG ATGGCCGCCC GGCACCCGAG CTGCGCGCCA CAGCGATCGC GCCGGTGTCC
GCCACACATG AAGCGCTCGG CGGCTCGCCG CTCGATCCGC GGCTGACCTT CGGCAGCTTC
GTGATCGGCC GCTCCAACAC GCTGGCGCAT GCCGCAGCAA GACAGGTCGC GGAAGGCCGC
CGCGGCGATC CGGTGATGTT CAATCCGCTC TACATTCACT CCGGCGTTGG TCTCGGCAAA
ACCCATCTGC TGCAGGCGGT GACCTGGGCC GGCAATTCCG GCACCGAACG CAAGGTGCTG
TATCTCACCG CCGAGAAATT CATGTACGGC TTCGTCGCGG CGCTGAAATC GCAGACCGCG
CTGGCCTTCA AGGAAGCGCT GCGCGGCATC GACGTGCTGG TGATCGACGA TCTGCAGTTC
CTGCAAGGCA AGACCACGCA GGCGGAGTTC TGCCACACCC TGAACGCGCT GATCGATGCC
GGCCGCCAGG TGGTGATCGC CGCCGATCGG CCGCCGTCGG ACCTGGAGAG CCTCGACGAG
CGGGTGCGCT CGCGGCTCGC CGGCGGCCTC GTCGTCGAAA TGGCCTCGCT CGGCGAGGAT
CTGCGGCTCG GTATCCTGAA ATCGCGGGTC ACCGCGGCCC GCGCGCATCA CGCGAGCTTC
GACGTGCCGC TACCGGTGTT GGAATATCTC GCCCGCACCA TCACCCACAA CGGCCGCGAC
CTCGAAGGCG CGATCAATCG CCTTTTGGCG CACTCCAAGC TGAACGCCCA GCCGGTGACG
CTGGAAATGG CCGAGCGGGA AATCCGCGAC CTGGTCCGTC CGCAGGAGCC GAAGCGGATC
AAGATCGAAG ACATTCAGCG CGTGGTGGCA CGGCAATACA ATGTCAGCCG CTCCGACTTG
CTGTCATCCC GCCGCACCGC CAATGTGGTG CGGCCGCGCC AGGTGGCGAT GTATCTGGCC
AAGACGCTGA CGCTACGCTC GCTGCCGGAG ATCGGCCGCA GGTTCGGCGG CCGCGACCAC
ACCACGGTGT TGCACGCGGT TCGCAAGATC GAAGGGCTGG TCGCCAAGGA TACGGCGTTG
TCCGACGAGG TGGAACTGCT GAAGCGCCAG CTCCAGGAAT AA
 
Protein sequence
MTNIEQDRWS RVKGRLRSSV GEDVYSSWFA RMDLESVQPE SVHLSVPTRF LKSWIQTHYS 
DRVLSCWQAE MPQVHRVDLT VRTAMRCAAP AKDAPAHAEP RRDDGRPAPE LRATAIAPVS
ATHEALGGSP LDPRLTFGSF VIGRSNTLAH AAARQVAEGR RGDPVMFNPL YIHSGVGLGK
THLLQAVTWA GNSGTERKVL YLTAEKFMYG FVAALKSQTA LAFKEALRGI DVLVIDDLQF
LQGKTTQAEF CHTLNALIDA GRQVVIAADR PPSDLESLDE RVRSRLAGGL VVEMASLGED
LRLGILKSRV TAARAHHASF DVPLPVLEYL ARTITHNGRD LEGAINRLLA HSKLNAQPVT
LEMAEREIRD LVRPQEPKRI KIEDIQRVVA RQYNVSRSDL LSSRRTANVV RPRQVAMYLA
KTLTLRSLPE IGRRFGGRDH TTVLHAVRKI EGLVAKDTAL SDEVELLKRQ LQE