| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_4014 |
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| Symbol | |
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| ID | 3967433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 5054707 |
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| End bp | 5056380 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637923111 |
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| Product | protein translocase subunit yidC |
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| Protein accession | YP_529481 |
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| Protein GI | 90023654 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.308779 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTGGC TAAGAAACTC GCTTATAGCG GCCATCCTTG TTATTACCTA CGTTCTATTT
ATTCGTTGGA ATGAATTTAG CGAACGTCAA CAAGTACCAA CTATTGCAAA CCAACCCGCC
GCAGTAACTA CCCCGGCCTA TGAGGCAGTC CCTTCCGATG ACGCAGTTGC CTCTAGTGCA
ACCGAGGAAA GCGACGTACC GGAAGTGAGC GTAAGCGCAG AGCCAGTAGC CGCACCAAAA
GCGGTTTACC AGCCTAAACT GGTTACCGTT AAAACCGATG TGCTTGAAGT ACAAATAGAC
ACCAACGGTG GTGATGTTTT ACAGGTAGTA CTGCTAAAGC ACTTGGCAGA TAAAGCCGAC
GATAACCAAC CGTTTGTGTT GATGACGCAA AACAGCGCCC ACACCTATGT AGCTCGCTCT
GGCTTAGCTG GCGGTAATGG CCCAGATGGT GCTAAAAAAG GTCGCGCTAA ATACAGTGTT
GCAAAAACCA ATTACAGCTT AAATAGCGAT GACCAAGTTG TAGTGGATCT CACCTTAGAC
CAAGAAAACG CACAAATTAC CAAGCGCTTT ACCTTTACCA AAAGCTCTTA CTTGATTGAT
GTTGAATACA TTATTACCAA CCGCGCCGAT ACTCCTTGGG CTGCAAAACT ATACGGCCAA
ATTATTCGCG ACGGCTCTGA GCCAAGCTAC GGGTATATGG GCATGCGCCC TTACCTAGGT
GCAGCTATAA CAACACCAGA AGTTAACTAC GAAAAAGTTA GCTTCGACGA TATGGATGAC
GGCCCGTTTA AAGTTGAACA AAAAGGCGGC TGGGTATCTT TAATTCAACA CTACTTTATT
AGTGCTTGGA TTCCACCAAA AGACGCAACC AACAGCTACG AGCTTTCTAA ATCGTCTAAA
GGCAATTACG TTTTGCGCTT TATTAGCGAA ACCACCACCG TTGCCCCTCA CTCTGTTGGT
ACTGTAAAAG CAGGTTTCTA CGCTGGCCCT AAAAATATTC GCCGCTTAGA AGAAATAAGC
CCGCACTTAG ATTTAACCAT CGACTACAGC TTTTTGTGGT TTATCGCTAA GCCGTTGTTC
TTCGCCTTGG ATTTTATTCA CGGTTTAGTA GGCAACTGGG GTGTAGCCAT TATTTTGCTA
ACGGTTTTAA TTAAAGCGGT ATTTTTCTAC CCATCTGCCA TGAGTTACCG CTCTATGGCC
AAGATGAGAA AACTGCAACC AATGATGGCC GAGCTAAAAG AGCGTTACGG CGAAGACAAA
CAAAAAATGT CTGGCGAGCT AATGAAGCTG TATAAGAAAG AAAAAGTGAA CCCCTTTGGC
GGTTGCTTAC CTATTCTTTT ACAAATGCCG GTATTTATAT CGCTTTACTG GATGATTATG
GAAAGCGTGG AATTACGCCA CCAACCATTC TTTTTATGGA TACAAGACTT AAGCGTTAAA
GACCCACTGT TTATCTTACC GTTGTTGATG GGTGTAACCA TGTATATTCA GCAAAAGCTG
AACCCAACTC CACCCGACCC AATGCAAGCA AAAGTAATGC AGATGATGCC TATTGGCTTT
ACCTTCTTAT TTATGTTCTT CCCTGCCGGT TTGGTTTTGT ACTGGGTAGT TAACAACACC
CTATCTATAA GCCAGCAGTA TGTTATTACT CGTAATATTG AAAAAGCTGG TTAA
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| Protein sequence | MNWLRNSLIA AILVITYVLF IRWNEFSERQ QVPTIANQPA AVTTPAYEAV PSDDAVASSA
TEESDVPEVS VSAEPVAAPK AVYQPKLVTV KTDVLEVQID TNGGDVLQVV LLKHLADKAD
DNQPFVLMTQ NSAHTYVARS GLAGGNGPDG AKKGRAKYSV AKTNYSLNSD DQVVVDLTLD
QENAQITKRF TFTKSSYLID VEYIITNRAD TPWAAKLYGQ IIRDGSEPSY GYMGMRPYLG
AAITTPEVNY EKVSFDDMDD GPFKVEQKGG WVSLIQHYFI SAWIPPKDAT NSYELSKSSK
GNYVLRFISE TTTVAPHSVG TVKAGFYAGP KNIRRLEEIS PHLDLTIDYS FLWFIAKPLF
FALDFIHGLV GNWGVAIILL TVLIKAVFFY PSAMSYRSMA KMRKLQPMMA ELKERYGEDK
QKMSGELMKL YKKEKVNPFG GCLPILLQMP VFISLYWMIM ESVELRHQPF FLWIQDLSVK
DPLFILPLLM GVTMYIQQKL NPTPPDPMQA KVMQMMPIGF TFLFMFFPAG LVLYWVVNNT
LSISQQYVIT RNIEKAG
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