| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3980 |
|---|
| Symbol | |
|---|
| ID | 3967303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 5010796 |
|---|
| End bp | 5011566 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637923077 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_529447 |
|---|
| Protein GI | 90023620 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3001] Fructosamine-3-kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.185726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCGA ATCAATCTTT TATCAAACAT AACTCGCAGG TCAATTCTAA TGCTTTATTG
GTGGAGGCCA GTGGATTAGC GCTGCTTAGT AAAACGCTTT TGGATAATTC CATTCTGGGT
AGTGAGTTGT GTATCCCTAA AGTATTAGCC GTTAATAAAA ACCAGCTAGA AATTGAATAT
ATTCAATCGC AGCGCCCAAG CGATAGTCAT TTTAAAACCC TTGGTGTTGG CTTAGCAAAA
CTACACACCA TCCAACAACC CCACTTTGGC TTAGAACACG ATAACTACAT AGGCCTTAAC
CCGCAGCCAA ATTGCATTAG TTATAATTGG GGGCAGTTTT TTTATCAGTA CCGATTGCAG
TATCAGGTGT CGCTTATTGC CGATAGCCAC GTTAAACAAC GCTTTCAAAC GCTGCTAAAT
ACACACCAAG CAAAACTAAT GGAGTTTTTA AACAACAGTT GTAGCTCGCC AAGTTTAGTG
CACGGCGATT TATGGAGCGG GAATGTTTTG TTTGATAAAC AACGCGTGTG GCTTATCGAC
CCCGCGGTGT ATTACGCCGA TAGCGAAGTA GATATAGCCA TGACGGAAAT GTTTGGCGGT
TTTGATGCTG CGTTTTATCA AGCCTATCAA ACGGTGCGGC CATTCACTGC GCAGTACCCC
ATTAAAAAGC GCATTTACAA TGCCTACCAT TATCTTAATC ATTACAACCT GTTTGGCGAT
AGTTACCTTG CTGGTTGCGA GCAAGGGTTG GGCATGATTG AAGCATTATA G
|
|---|
| Protein sequence | MAANQSFIKH NSQVNSNALL VEASGLALLS KTLLDNSILG SELCIPKVLA VNKNQLEIEY
IQSQRPSDSH FKTLGVGLAK LHTIQQPHFG LEHDNYIGLN PQPNCISYNW GQFFYQYRLQ
YQVSLIADSH VKQRFQTLLN THQAKLMEFL NNSCSSPSLV HGDLWSGNVL FDKQRVWLID
PAVYYADSEV DIAMTEMFGG FDAAFYQAYQ TVRPFTAQYP IKKRIYNAYH YLNHYNLFGD
SYLAGCEQGL GMIEAL
|
|---|
| |