| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3965 |
|---|
| Symbol | atpC |
|---|
| ID | 3967269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4997589 |
|---|
| End bp | 4998011 |
|---|
| Gene Length | 423 bp |
|---|
| Protein Length | 140 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637923062 |
|---|
| Product | F0F1 ATP synthase subunit epsilon |
|---|
| Protein accession | YP_529432 |
|---|
| Protein GI | 90023605 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) |
|---|
| TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000000264026 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.273139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATGA CAGTACATTG CGACATTGTT AGCGCCGAGC AAGAAATTTT TTCTGGGGCA
ATCGAGCTTT TAGTTGCCGC ATCAGTAGAG GGTGACGTAG GTATAAACTA CGGTCACGCT
CCACTGCTAA CCGCGCTTAA GCCCGGCCCA GTAAGAGTTA AAAAATTAGA CGGTGAAGAG
GAAATCTTCT ACGTATCTGG CGGTTACTTA GAAGTACAGC CACACGTAGT AACCGTTCTT
GCAGATACCG CTTTACGCGC AGGCGACATG GATGAAGCCG CCGCTGAAGC TGCAATGAAA
GAAGCCGAGC AGGCTATCCA ATCTAGCGAA GGTTTGGACT ACTCCAAAGC CGCCGCACAA
TTGGCAGAAT CTGCTGCACA GCTCCGCACC TTGCAAGCTA TCCGCAAAAA GCTACAGCGT
TAA
|
|---|
| Protein sequence | MAMTVHCDIV SAEQEIFSGA IELLVAASVE GDVGINYGHA PLLTALKPGP VRVKKLDGEE
EIFYVSGGYL EVQPHVVTVL ADTALRAGDM DEAAAEAAMK EAEQAIQSSE GLDYSKAAAQ
LAESAAQLRT LQAIRKKLQR
|
|---|
| |