| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3963 |
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| Symbol | |
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| ID | 3967267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4993647 |
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| End bp | 4996085 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637923060 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_529430 |
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| Protein GI | 90023603 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000386767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0993256 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAC AAAACACTAA CCAAGTATTA GCTAAGAATG TCTTAAGTTT CATGGTTGCT
TCGGCGATCG CGGGTTTTGC CCATGCAGAG TCGACGGGAC TCGCGCTGGA AGAAGTATTA
GTGACGGGCT TACCTACCCA ACAAACAAAA ATGGATGCAA GTGTGTCCTC TACCACCTTG
TCACCCGAGC GGGTAGAAAA CAGTGTGGCC CGCAGTACCA CAGAAATTTT CTTAGCCATT
CCTGGTGTGC GCTCAGAAGC GTCAGCCGGT GAGAGTAATA CCAACCTTTC TATTCGCGGC
ATACCCGTAG CATCCGGTGG TGGCAAGTTT ATGCAACTGC ATGAAGATGG TTTGCCTGTA
ATGCAATACG GCGATGTAAT TGTAGGTAAC GCCGATAACT ATCTTAGTTA TGACTGGACA
GTTAGCCAAA TTCAGGCCGT CAAAGGCGGT ACTTCAGCTA CATTGGCAAG TAACTCCCCT
GCTGCTGTTA TTAACTTTGT AAGTAAAACA GGTGAGGAGG AAGGCGGTAG TGTTGGCTTT
AGCACCGGCG TTGATTACGA CTCAAACCGC ATGGACTTTG AGTACGGCAG TCCATTTTCT
GACGGTTGGA TGTTCCACGT TGGCGGCTAC TATCGCACCG GTGAAGGTGT GCGAGACACA
GGGTTTAATG GTAACAAAGG TGGCCAATTA AAGCTGAGTA TTAAAAAAGA ATTTGATCGC
GGCTATGTGC GTGTATACGG CAAAGTGCTA GATGACAAAA CCACCACCTA CTTGCCCATG
CCTATGCGCG CGGGTGGCGA TAGCATTACT GGTTTCGATG CCCTCAAATC TTCTAATATT
CCAAGTGAAC TGCTTGCAAT ACAAACCGGT GATGGCGGAA CAGGTGTACG CCATTCAAGT
ATTGGTGATG GTAGCTCAGT AAAATCACAA GTGATCGGCG GTCAAATTCA GTTTGATATA
ACTGACGACC TAATTCTTAG TGAAAAATTT CGAGTTGCCC AGAATTCAGG TAAATTTGTT
GGTGCGTTCA GCGCAAATAT TGGCGCGGCG TCAGACCCTT CAGGTATTGC TTCTGGTTTA
GGTAGCGCAA ACGGCTTGGC CTATGCTTCT GGTAAAAACG CGGGAGAACT ACTAAGTGCA
AGCGACTTGG CAAACCTTAA TGGCAACGGC TTAATTCAAA ATATTCGTAC GTTTGATAAC
GATATTAATA GTTTAAATAA TTTTAGTAAC GATATTAGCT TAACCAAACA ATTTGATAGC
TGGGATATTA CCGCTGGCTA TTACACAGCA AGCCAAGCCA TAGATATAAA CTGGTATTGG
CAAACCTATA TTGCAGATGT AGCGGATGAA ACGCGCCTAC TAAATGCTTA TGAAGACGAC
GCCCAACTAA CAACAGGTGG CTTAGTTGCT TACGGCGCGC CTGACTGGGG TTACTGTTGT
TATCGCGATA CCGCGCTAGA AACAAACTTA GACGCGGTCT ACATTGCTTT AAATGCAAAT
ATTAATGACG ACTTAAGTGT AAGCGCTAGT GTTCGCAGCG ATAGCGGCGA TGCAATTGGT
CATTACGCGT TTGGTGCGAA TAACAGTGTT GATTTTGATG GCAATGGAGA AATCTCTCTC
GCAGAAAGCC AAGCTCAAAC TATCAGCCAG GCGTCAATTG CAGGCAGCCA ATATAAATAC
GATTGGGCAT ATACCTCCTA TGCTTTGGGT GCAAACTATT TACTTAACGA TTACTCCGCT
ATTTTTGCCA ACATCAGTGA TGGCGGCCGC GCGAACACAG ACCGCTTAGG TGACGGTGGC
TTTATTGTAG ATGGTACCGT TGTGGATGGT GCGGTGGAAA ACCGAGTGCG CCAATACGAA
TTTGGTTATA AGCGCGAAGG TGACTACGCC GGTATTTTTG CCACAGCATT TTATGTTCAA
ACCGACGATG TAAACTCTGA AGGTACCAAT GGCAGCACAT TAACCGCGCG TGTTCGTGAA
TATGAATCTA CTGGGCTAGA GCTAGAAACG TTTGCGAATC TTGGTGCAGT TACGCTACTT
GCAAACGCGA CTTGGACTCA AGCAGAAATT GTGAGCAGTA ACGATGCATC GTTAATTGGT
AATACTCCTC GCCGCCAAGC CGATTTAGTT TATTCAACAA CAGCATCCTA TGCTTGGAGT
GATCACAGCG CTGGCTTGAC ACTCATAGGC ACCACCGATT CCTACGCGCA AGACGCCAAC
GACTACACGC TTGATGGTTA CAACTATGTT AATGGTTACG TTAATTTTGG CCTTGCAGAC
GGCTTTACGG TTTCGCTAGC GGTTAACAAT ATTTTTGATC AAATTGGCGT GACCGAAGCT
GAAGAAAATA CTCCTATCTC TATTAGCGGT GCAGACTATG TACGCGCTAG ATCCATCGCC
GGACGCTCTA CTAGCTTGTC AGTCAAGTAT CAGTTCTAG
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| Protein sequence | MSTQNTNQVL AKNVLSFMVA SAIAGFAHAE STGLALEEVL VTGLPTQQTK MDASVSSTTL
SPERVENSVA RSTTEIFLAI PGVRSEASAG ESNTNLSIRG IPVASGGGKF MQLHEDGLPV
MQYGDVIVGN ADNYLSYDWT VSQIQAVKGG TSATLASNSP AAVINFVSKT GEEEGGSVGF
STGVDYDSNR MDFEYGSPFS DGWMFHVGGY YRTGEGVRDT GFNGNKGGQL KLSIKKEFDR
GYVRVYGKVL DDKTTTYLPM PMRAGGDSIT GFDALKSSNI PSELLAIQTG DGGTGVRHSS
IGDGSSVKSQ VIGGQIQFDI TDDLILSEKF RVAQNSGKFV GAFSANIGAA SDPSGIASGL
GSANGLAYAS GKNAGELLSA SDLANLNGNG LIQNIRTFDN DINSLNNFSN DISLTKQFDS
WDITAGYYTA SQAIDINWYW QTYIADVADE TRLLNAYEDD AQLTTGGLVA YGAPDWGYCC
YRDTALETNL DAVYIALNAN INDDLSVSAS VRSDSGDAIG HYAFGANNSV DFDGNGEISL
AESQAQTISQ ASIAGSQYKY DWAYTSYALG ANYLLNDYSA IFANISDGGR ANTDRLGDGG
FIVDGTVVDG AVENRVRQYE FGYKREGDYA GIFATAFYVQ TDDVNSEGTN GSTLTARVRE
YESTGLELET FANLGAVTLL ANATWTQAEI VSSNDASLIG NTPRRQADLV YSTTASYAWS
DHSAGLTLIG TTDSYAQDAN DYTLDGYNYV NGYVNFGLAD GFTVSLAVNN IFDQIGVTEA
EENTPISISG ADYVRARSIA GRSTSLSVKY QF
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