| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3953 |
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| Symbol | |
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| ID | 3967218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4982375 |
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| End bp | 4983238 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637923050 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_529420 |
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| Protein GI | 90023593 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins
[COG3449] DNA gyrase inhibitor |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0509927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAA CCCTAACACT AGCCATTTAT CGCGACCGTA TTTTAGCGGT AGTAGATTAC
ATATGGCGCA ATATTGAACG CGATGTAGAG CTAAACACCT TAGCCGACGT TGCGCACTTT
TCGCCTTATC ATTTTCATCG CATCTACCGT GAAATGATGC ATGAAACGGT AAGTACTACT
GTTAGACGCT TGCGATTGCA CTATGCCGCC TGCCAACTGC TGCGCACCAA TCACAGCGTA
GAAACCATTG CCACTACTTT AGGGTATGGC AGCGGTGAGG CTTTTAGCCG CGCGTTTAGT
CGCGCCTACA CTGTTACCCC CTCGGCCTAC CGCCAACAGC GCAGCCCTTT ACCCGAAGCC
AAGATGGCTT TACCCAGTAG GAGGTTTTAC GCAATGAAAC ACACTGTAGA CATTGAAAAG
TTTAATAAAG TTGAACTCGG CGGCTTAGCA CACCAAGGCG ACTACTTGGA TATTGGCGCT
GTTTTCGAGA AGGTATTTGT ATCTGCTGGC AGCAAGCAAT TTTTAAATGA GCATTCGCGC
TCGTTTGGAA TTTATTACGA CGACCCAACC AGTAAAGATA AAAGCGCACT GCGCTCGCAC
GCTTGCGTAA CCCTTAACCC GCAACAGGTA AAAGAAGCCG GCTTAGACTA TTTAACTTTA
GAAGCGGGCA ACCATGCAGT ACTTACGTTT ACGGGGCCCT ATTCCGAATT AGAACAAGCC
TATGAATGGT TTTACGGTGA ATGGTTACCG CAATCGGGGT ATCAACTTGC CGACCGCCCA
CCATTCGAAG AATACTTAAA CGACCCCAAA ACTGTGCCGC CCAGTGAATT ACTAACAAAA
ATATATTTAC CCCTAGCAGA ATAA
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| Protein sequence | MNKTLTLAIY RDRILAVVDY IWRNIERDVE LNTLADVAHF SPYHFHRIYR EMMHETVSTT
VRRLRLHYAA CQLLRTNHSV ETIATTLGYG SGEAFSRAFS RAYTVTPSAY RQQRSPLPEA
KMALPSRRFY AMKHTVDIEK FNKVELGGLA HQGDYLDIGA VFEKVFVSAG SKQFLNEHSR
SFGIYYDDPT SKDKSALRSH ACVTLNPQQV KEAGLDYLTL EAGNHAVLTF TGPYSELEQA
YEWFYGEWLP QSGYQLADRP PFEEYLNDPK TVPPSELLTK IYLPLAE
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