Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3936 |
Symbol | |
ID | 3967201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4961625 |
End bp | 4963100 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637923033 |
Product | H+-transporting two-sector ATPase, delta (OSCP) subunit |
Protein accession | YP_529403 |
Protein GI | 90023576 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAATG TTGTATTGGG TGGTGTGGTT GGGTTTGCTT TGGGTGCTGG GGCGCTATGG GCTTTAACGA GTTTAATAAC CGACCGCGGG CAAATAAATG AAGCGGCGGA GGCAAAGCCT TTGTATTGGG TGGCGCCTAT GGACCCAAAC TATCGCCGCG ATAAACCGGG TAAGTCGCCC ATGGGTATGG ATTTGATACC CGTGTATAAC AACGATGCAT CCAGTGGTGC TGCGGGTACC GTTATTATTT CGCCCAATGT CGAAAATAAT TTGGGCGTGC GTACTGCCAA AGTGCAATTG CAGCCATTGC ACACCCAAAT TAAAACCGTG GGCTATGTGC AGTACGATCA AGACAACCTA GTACATGCTC ACCCGCGGGT TTCCGGTTGG ATAGAAAAAC TATACGTTAA ATCTGCCGGC GACCCTGTAC AAAAGGGGCA GCCCCTTTAC TCGCTTTATT CCCCAGAGCT TGTAAGCGCT CAAGAGGAGC TTATCCTCGC ATTAAATACT GGTAACACCA AGCTCGTTAA ATCGGTAGAA AGCCGCTTAA AAGCGCTGCA TTTTCCCGCT AAAGAAATTG CGGAGCTCAC CCATACCCGC AAAGTTCAGC AAGCGGTAAT GTTCCCCTCG CCGCAAAACG GTGTGGTGGA TAATTTAAAT ATTCGCGAAG GGTTTTATGT CACACCGGGC ACTACGTTAA TGTCTATTGG CACGCTCGAC GAGGTGTGGG TGGTGGCGGA AGTGTTTGAA CGTCAGGCGT CGCTGGTACA AGTGGGCCAG CCGGTAACCA TGTATTTAGA TTACCTGCCA AATAAACAGT GGGCAGGCAA AGTAGATTAT GTGTACCCAT CACTCGATGC CAAAACGCGC ACAGCCCGTG TGCGTTTACG CTTTAAAAAT GCCGACCATT TACTCAAGCC AAATATGTTT GCCGAAGTGA TTATTCATGT AGCAAATGCT GAAAACGCTT TAGTAATACC GCGCGAGGCG GTTATTCGCA CCGGCAGCCA AGACCGTGTA GTGCTGGCTT TGGGTGACGG ACAATTTAAA TCCGTAGCCG TCGAATTGGG CCGCATGGAC GACAACTTTG TCGAAATATT GGAAGGCCTA GAAGAAAACG AACGCATTGT TACATCCGCC CAGTTTTTAC TTGATTCCGA ATCGAGCAAA ACCTCCGATT TTAAACGTAT GGATCACAGC CAAAATTTAT TGGCGCCAGT CTGGGTAGAG GCAAAAGTAG AGCAAGTAAT GGCGGTCATG AATATGGTTA AGCTTACCCA TGAGCCTATT CCTGAATGGG ACTGGCCGGT AATGACCATG ATGTTTTTTG TAGACGACAG CATAGACATG GGCCAATTTG AAACAGGCTT AACGCTGCAT GTACAAATAG AAAAAGATGC CGATGAAGAT TATGTAATTA CCCAGGTGCA TATACCCAAT GGCACCGCGC CGCATGCAAG CGGAGGTGCA AAATAA
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Protein sequence | MKNVVLGGVV GFALGAGALW ALTSLITDRG QINEAAEAKP LYWVAPMDPN YRRDKPGKSP MGMDLIPVYN NDASSGAAGT VIISPNVENN LGVRTAKVQL QPLHTQIKTV GYVQYDQDNL VHAHPRVSGW IEKLYVKSAG DPVQKGQPLY SLYSPELVSA QEELILALNT GNTKLVKSVE SRLKALHFPA KEIAELTHTR KVQQAVMFPS PQNGVVDNLN IREGFYVTPG TTLMSIGTLD EVWVVAEVFE RQASLVQVGQ PVTMYLDYLP NKQWAGKVDY VYPSLDAKTR TARVRLRFKN ADHLLKPNMF AEVIIHVANA ENALVIPREA VIRTGSQDRV VLALGDGQFK SVAVELGRMD DNFVEILEGL EENERIVTSA QFLLDSESSK TSDFKRMDHS QNLLAPVWVE AKVEQVMAVM NMVKLTHEPI PEWDWPVMTM MFFVDDSIDM GQFETGLTLH VQIEKDADED YVITQVHIPN GTAPHASGGA K
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