Gene Sde_3936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3936 
Symbol 
ID3967201 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4961625 
End bp4963100 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content48% 
IMG OID637923033 
ProductH+-transporting two-sector ATPase, delta (OSCP) subunit 
Protein accessionYP_529403 
Protein GI90023576 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAATG TTGTATTGGG TGGTGTGGTT GGGTTTGCTT TGGGTGCTGG GGCGCTATGG 
GCTTTAACGA GTTTAATAAC CGACCGCGGG CAAATAAATG AAGCGGCGGA GGCAAAGCCT
TTGTATTGGG TGGCGCCTAT GGACCCAAAC TATCGCCGCG ATAAACCGGG TAAGTCGCCC
ATGGGTATGG ATTTGATACC CGTGTATAAC AACGATGCAT CCAGTGGTGC TGCGGGTACC
GTTATTATTT CGCCCAATGT CGAAAATAAT TTGGGCGTGC GTACTGCCAA AGTGCAATTG
CAGCCATTGC ACACCCAAAT TAAAACCGTG GGCTATGTGC AGTACGATCA AGACAACCTA
GTACATGCTC ACCCGCGGGT TTCCGGTTGG ATAGAAAAAC TATACGTTAA ATCTGCCGGC
GACCCTGTAC AAAAGGGGCA GCCCCTTTAC TCGCTTTATT CCCCAGAGCT TGTAAGCGCT
CAAGAGGAGC TTATCCTCGC ATTAAATACT GGTAACACCA AGCTCGTTAA ATCGGTAGAA
AGCCGCTTAA AAGCGCTGCA TTTTCCCGCT AAAGAAATTG CGGAGCTCAC CCATACCCGC
AAAGTTCAGC AAGCGGTAAT GTTCCCCTCG CCGCAAAACG GTGTGGTGGA TAATTTAAAT
ATTCGCGAAG GGTTTTATGT CACACCGGGC ACTACGTTAA TGTCTATTGG CACGCTCGAC
GAGGTGTGGG TGGTGGCGGA AGTGTTTGAA CGTCAGGCGT CGCTGGTACA AGTGGGCCAG
CCGGTAACCA TGTATTTAGA TTACCTGCCA AATAAACAGT GGGCAGGCAA AGTAGATTAT
GTGTACCCAT CACTCGATGC CAAAACGCGC ACAGCCCGTG TGCGTTTACG CTTTAAAAAT
GCCGACCATT TACTCAAGCC AAATATGTTT GCCGAAGTGA TTATTCATGT AGCAAATGCT
GAAAACGCTT TAGTAATACC GCGCGAGGCG GTTATTCGCA CCGGCAGCCA AGACCGTGTA
GTGCTGGCTT TGGGTGACGG ACAATTTAAA TCCGTAGCCG TCGAATTGGG CCGCATGGAC
GACAACTTTG TCGAAATATT GGAAGGCCTA GAAGAAAACG AACGCATTGT TACATCCGCC
CAGTTTTTAC TTGATTCCGA ATCGAGCAAA ACCTCCGATT TTAAACGTAT GGATCACAGC
CAAAATTTAT TGGCGCCAGT CTGGGTAGAG GCAAAAGTAG AGCAAGTAAT GGCGGTCATG
AATATGGTTA AGCTTACCCA TGAGCCTATT CCTGAATGGG ACTGGCCGGT AATGACCATG
ATGTTTTTTG TAGACGACAG CATAGACATG GGCCAATTTG AAACAGGCTT AACGCTGCAT
GTACAAATAG AAAAAGATGC CGATGAAGAT TATGTAATTA CCCAGGTGCA TATACCCAAT
GGCACCGCGC CGCATGCAAG CGGAGGTGCA AAATAA
 
Protein sequence
MKNVVLGGVV GFALGAGALW ALTSLITDRG QINEAAEAKP LYWVAPMDPN YRRDKPGKSP 
MGMDLIPVYN NDASSGAAGT VIISPNVENN LGVRTAKVQL QPLHTQIKTV GYVQYDQDNL
VHAHPRVSGW IEKLYVKSAG DPVQKGQPLY SLYSPELVSA QEELILALNT GNTKLVKSVE
SRLKALHFPA KEIAELTHTR KVQQAVMFPS PQNGVVDNLN IREGFYVTPG TTLMSIGTLD
EVWVVAEVFE RQASLVQVGQ PVTMYLDYLP NKQWAGKVDY VYPSLDAKTR TARVRLRFKN
ADHLLKPNMF AEVIIHVANA ENALVIPREA VIRTGSQDRV VLALGDGQFK SVAVELGRMD
DNFVEILEGL EENERIVTSA QFLLDSESSK TSDFKRMDHS QNLLAPVWVE AKVEQVMAVM
NMVKLTHEPI PEWDWPVMTM MFFVDDSIDM GQFETGLTLH VQIEKDADED YVITQVHIPN
GTAPHASGGA K