| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3935 |
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| Symbol | |
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| ID | 3967200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4958492 |
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| End bp | 4961620 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637923032 |
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| Product | ATP synthase F1, alpha subunit |
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| Protein accession | YP_529402 |
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| Protein GI | 90023575 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGTTG CCATTATTCG TTGGGCTATA CACAACCGCT TTTTTGTTTT ACTCGCCACT
GCAATACTGG TGGGGGTTGG TATTTTTTCT ATTCGCAACA CACCGGTCGA TGCCATACCC
GATTTATCCG ATGTGCAAGT AATAATAAAA ACCAGCTACC CTGGCCAAGC ACCGCAAGTA
GTAGAAGACC AAGTGACCTA CCCGCTTACT ACTGCCATGC TTTCTGTACC CGGTGCGCGC
ACAGTGCGGG GTTATTCATT TTTTGGCGAT TCTTACGTTT ACGTAATTTT TAACGAAAAA
ACCGATTTGT ATTGGGCGCG CAGTCGCGTA TTGGAATACT TAAGCCAAGT GGCGCCTTCA
TTACCTGCAG AAGCTACACC GCAATTGGGG CCAGATGCTA CAGGCGTTGG TTGGGTGTAT
GTATATGCGC TGGTAGATAA AACCGGTAAG CACGATATTA GCCAGCTGCG CAGCCTGCAG
GATTGGTTTT TAAAATATGA ACTGCAAACC GTAGAGGGTG TAAGTGAAGT AGCCGCTATT
GGCGGCATGG TAAAACAGTA TCAAGTAACA GTTAACCCAG AAAAATTGCG CGCCTTTGGA
ATACCCCTTG CGCATATACA AAATGCTATA AAGCGCGCAA ACCAAGAAGT GGGCGCATCG
GTAATTGAAA TGGCCGAAGC GGAATATATG GTACGCGCCA CGGGCTACAT TAAAAGCCAA
AAAGATCTAG AAACCATTCC TCTAGGTGTG AACGTAAGTG GCACGCCTAT TTTGTTAAAA
GATGTTGCCA ATATAGGTTT TGGCCCTCAA ATGCGTCGCG GTATTGGCGA GCTAAATGGC
CAAGGCGAAA CCGTGGGTGG CGTGGTGGTA ATGCGTTTTG GAGAAAACGC GCAATCTACC
ATTCGCGCAG TAAAAGAAAA ATTAACCAGT ATTAAACAAG GCCTGCCCGA TGGGGTAGAA
ATAGTTACCG TTTACGATCG CTCGGGTTTA ATAGAGCGCG CTATTAATAA TTTATGGCAC
AAGCTAGTCG AAGAGCTGGT GATGGTAGCG TTGGTATGTA TTGTATTTCT ATTTCACATT
CGCTCTTCTC TAGTGGCCAT AGTAAGTTTA CCCATCGGTA TTTTAGCCGC ATTTAGCGTT
ATGTATTTTC AGGGTTTAAA TGCCAACATA ATGAGCTTGG GTGGTATAGC TATTGCCATT
GGCGCAATGG TAGATGGGGC CATAGTACTG ATAGAAAATA TGCACAAGCA TATAGAAAAA
CTCAAAGCCG AAGGCGGTGA GCTAACCGAT AAAAATCGCT GGCATGTTGT GGGCGCCGCT
GCCACTGAAG TTGGCCCCGC TTTATTTTTT AGTTTGTTAA TTATTACCGT AAGCTTTATT
CCAGTATTTA CCTTAGAGGC CCAAGAGGGG CGTATGTTTT CGCCCTTGGC CTACACCAAA
ACCTACGCAA TGGCTGCTGC TGCTGGCTTA GCCATTACAC TTGTGCCGGT GTTAATGGGG
TATTTTATAC GCGGTAATAT TATTGCCGAG AATAAAAACC CGGTTAATCG GTTATTAATT
GCTGCCTATA CGCCACTTTT ATCGGGCGTA TTGCGCTTTC CTAAAAGCAC CTTGTTGGTG
GCGCTAATAG TATTGGTAAG CAGTTGGTAC CCTGTGCAGC GTATTGGCAG TGAGTTTATG
CCGCAGTTGG ACGAAGGCGA TATGATGTAT ATGCCTACTA CCTACCCCGG TATTTCTATT
GGTAAAGCGC GCGAAATACT ACAACAAACC GACAAGCTTA TTGCCACCGT ACCAGAAGTA
AAAAATGTAT TTGGCAAAAT AGGTCGTGCA GAAACTGCCA CCGATCCTGC GCCGCTATCT
ATGATAGAAA CCTTTATTCA GTTAAAGCCC CGCAGTGAAT GGCGCGCAGG TGTAACCCCA
GAAAGTTTGC AGAAAGAGCT AAATAGTTTG GTAACGCTGC CGGGTGTAAG TAATACATGG
GTTATGCCAA TAAAAACGCG CATAGATATG TTAGCAACAG GCATTAAAAC CCCAGTGGGT
ATTAAAGTGG CAGGGCCTAA GCTTGCAACT ATACAAAGTA TTGGTGAGCA ACTAGAAAAT
ATATTGCCAC AAGTACAGGG TACCGCTTCG GTGTATTCCG AGCGGGTTGC TGGTGGGCGT
TATATAAAAG TGGATATACA GCGTGAAAAA GCCGCGCGCT TTGGTTTAAA TATTGCCGAT
GTACAACAGG TGATAGCGTC CGCTATTGGC GGCACCAATG TGACTTATAC GGTAGAAGGG
TTGGAGCGTT ACCCCGTAAA TATCCGCTAC CCGCAATCCT ATCGTGCATC CCCCGAGCAG
CTTGCGCTAT TGCCAATTGT TACACCTAAT GGCCAGCGTA TTGCCCTGGG CGATGTAGCG
CACGTAAAAA TAGAGGATGG CGCACCCAGC ATTAAAAGTG AAAACGCGCG CATAAACGGT
TGGGTATATG TAGATATAGA AAAAGTAGAT GTGGGAAGTT ACGTTGCGCA AGCAAAAAAA
ATAGTGACGC AGCAGTTAGA TTTACCCGCG GGCTATACCA TTACATGGGC TGGCCAATAT
GAATATATGG AGCGCGCTAA AGAGAAGCTA AGTTACGTAA TTCCACTTAC GCTCGCCATA
ATTATTGTGC TGTTGTATTT AAATTTTAGG CGAGTAGCAC CGGTTGCTAT GCTGGTTGTT
ACGCTGCCGC TTTCGTTAGT TGGCAGTGTG TGGCTAATGT ATTGGCTGAA TTTTGATTTT
TCTATTGCGG TGGGTGTGGG CTTTATTGCA CTGGCTGGGG TTGCCGCCGA AACAGGGGTT
ATTATGTTGG TGTATTTAGA TCACGCCTAT AGGGATTTAT TGATTGCCCA CAAAGCGCCA
ACCAAACTGC AATTACAACA GGCCCTGCTA CAAGGCGCAG CTAAGCGTGT AAGACCAGTA
GTAATGACCG CCGGTGCAAC TATTATTGGC TTGGTACCTA TTATGCTAGG CGATGGTACC
GGCTCGGAAA TTATGAGCAG GCTCGCCGCA CCCATGGTGG GTGGCATGGT GAGTGCTGTA
TTGCTAACGC TGCTGGTATT GCCCGCACTA TATTTTATGG TGGTTGCGCA GCAAAAGAAT
GAGGTGTAA
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| Protein sequence | MIVAIIRWAI HNRFFVLLAT AILVGVGIFS IRNTPVDAIP DLSDVQVIIK TSYPGQAPQV
VEDQVTYPLT TAMLSVPGAR TVRGYSFFGD SYVYVIFNEK TDLYWARSRV LEYLSQVAPS
LPAEATPQLG PDATGVGWVY VYALVDKTGK HDISQLRSLQ DWFLKYELQT VEGVSEVAAI
GGMVKQYQVT VNPEKLRAFG IPLAHIQNAI KRANQEVGAS VIEMAEAEYM VRATGYIKSQ
KDLETIPLGV NVSGTPILLK DVANIGFGPQ MRRGIGELNG QGETVGGVVV MRFGENAQST
IRAVKEKLTS IKQGLPDGVE IVTVYDRSGL IERAINNLWH KLVEELVMVA LVCIVFLFHI
RSSLVAIVSL PIGILAAFSV MYFQGLNANI MSLGGIAIAI GAMVDGAIVL IENMHKHIEK
LKAEGGELTD KNRWHVVGAA ATEVGPALFF SLLIITVSFI PVFTLEAQEG RMFSPLAYTK
TYAMAAAAGL AITLVPVLMG YFIRGNIIAE NKNPVNRLLI AAYTPLLSGV LRFPKSTLLV
ALIVLVSSWY PVQRIGSEFM PQLDEGDMMY MPTTYPGISI GKAREILQQT DKLIATVPEV
KNVFGKIGRA ETATDPAPLS MIETFIQLKP RSEWRAGVTP ESLQKELNSL VTLPGVSNTW
VMPIKTRIDM LATGIKTPVG IKVAGPKLAT IQSIGEQLEN ILPQVQGTAS VYSERVAGGR
YIKVDIQREK AARFGLNIAD VQQVIASAIG GTNVTYTVEG LERYPVNIRY PQSYRASPEQ
LALLPIVTPN GQRIALGDVA HVKIEDGAPS IKSENARING WVYVDIEKVD VGSYVAQAKK
IVTQQLDLPA GYTITWAGQY EYMERAKEKL SYVIPLTLAI IIVLLYLNFR RVAPVAMLVV
TLPLSLVGSV WLMYWLNFDF SIAVGVGFIA LAGVAAETGV IMLVYLDHAY RDLLIAHKAP
TKLQLQQALL QGAAKRVRPV VMTAGATIIG LVPIMLGDGT GSEIMSRLAA PMVGGMVSAV
LLTLLVLPAL YFMVVAQQKN EV
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