| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3920 |
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| Symbol | |
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| ID | 3967185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4940480 |
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| End bp | 4941583 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637923017 |
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| Product | helix-turn-helix, AraC type |
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| Protein accession | YP_529387 |
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| Protein GI | 90023560 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2815] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.597723 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGATG TATTCATTAG CTATTCCCGC CGCGATCAAG AAGCCGTCGA AAAAATTCGC
AAAGCCCTAA GCCGTCGTGG CGTAGATGTA TGGATAGACC AAGAAGATAT CGGCACTGGC
TCTCGCTGGG ATTTACAAAT AGAAGAGGGC ATACAAAAGA GTAAAAAAGT ACTGGTTATT
CTTTCTGCCG ATTCCATTAT CTCATCCAAT GTAAGCGACG AATGGGCATT TGCATTAGAG
AAGGGCAAGC ACCTTATACC CGTGCTACTT GAAGAATGCG ATGTACCTAT GCGGATCGCC
AACCTGCAAC GCATAGAGCT GGTACCCGAT TTCGACAAAG GCATTAGCAA ACTTGTTGAA
GAAGTCCTTA AAAACAGCAA AACGGCAGCG ACAAAAAAAC AGGGCCCTAG CTTTACCTTA
CCGCCGGCAT TTATTAACTT TTTTAAATAT GCTGTGCCAC TGGTGTTAGT AGTAGGCGGT
GCTATTTTTG GCTATAACAA ATATTTTTCT ACCGTAGAGG TGCAAGATTT AATTGGCGTA
AGCGAATCGG AAGCAGCGCG CATTTTAAAA GACAATAACT TATCTATAGG CCGTGTTATT
GTGGATTATA ACGAAGCGCC GGAATTTACC GTATATAAAT CTGAACCCGC CGCCGGCGCC
GAAGTAAAAC GTTTTAGCAA AGTAGATATT CACGTTGTAA AAGAAAAGTT ACGCGTACCC
AATGTAGTAG GGCTTAGCCG CAAAAGCGCC GTAGACACAT TAGAAAGCAT GGGGTTTGCA
GTTACTGTAG TGCGATCGGT TCGCCACGGC ACTAACGATT TTGGCAAAAT TATTTCTATG
TCGCTAAGAG AAAACGACCC GGCCTACCCA GGCACAGAAA TAGCCATCAC CCTCGCAGAT
AAAGGCGGCT GGATATTTTT AAAAGATGGC GACCAAGATG AAATACTCCC CATCCCAAAA
GATTTTCGTT TGCGTAACGA TACCGACAGC ACCAGTAGCG ATACAGTTAT AGGCACATTG
CGCAAAGGCA CGTTAGTAAA GGTAGTAAAA ACACACGGTA CTGGTTGGCG TTTGGTGCGC
GTAGTTAACC CGCAAGAAGT ATAA
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| Protein sequence | MHDVFISYSR RDQEAVEKIR KALSRRGVDV WIDQEDIGTG SRWDLQIEEG IQKSKKVLVI
LSADSIISSN VSDEWAFALE KGKHLIPVLL EECDVPMRIA NLQRIELVPD FDKGISKLVE
EVLKNSKTAA TKKQGPSFTL PPAFINFFKY AVPLVLVVGG AIFGYNKYFS TVEVQDLIGV
SESEAARILK DNNLSIGRVI VDYNEAPEFT VYKSEPAAGA EVKRFSKVDI HVVKEKLRVP
NVVGLSRKSA VDTLESMGFA VTVVRSVRHG TNDFGKIISM SLRENDPAYP GTEIAITLAD
KGGWIFLKDG DQDEILPIPK DFRLRNDTDS TSSDTVIGTL RKGTLVKVVK THGTGWRLVR
VVNPQEV
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