| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3882 |
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| Symbol | |
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| ID | 3967107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4897212 |
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| End bp | 4900097 |
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| Gene Length | 2886 bp |
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| Protein Length | 961 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637922979 |
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| Product | beta-galactosidase |
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| Protein accession | YP_529349 |
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| Protein GI | 90023522 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0857074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.216431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTT CTCTCTATTA CCACGGGCGC GTAGTGGGGC GGCTGGTTTT GTTACTTGCT
GTTCTGTTTG GCTCTAGTGC TGCGTTTGCA GCAGAGCAAG AGGACGGTCG TGAGCGGTTG
TCTTTAAATC GCGGCTGGTA TTTTCATTTG GGCGATGTGC CTATGGCGCC TATAAAGGGC
CACAGCGAAT CTTATATGAA TGCCAAGGCG GGCAATGCGC CAGGGCCTGC GGGTAGGGAG
TTTGACGATT CTGAATGGCG ACGTTTAGAT TTGCCGCACG ATTGGGCGGT AGAAGGGCCC
TTTGACCCCA ACGAAAATAT CTCGCAGGGC TACAGGCCGC GTGGCATAAG TTGGTACCGC
CGCTATTTGC GAGTGGAGGA GAGCGATAGA GGCCGCTATT TTGAACTGCA ATTTGATGCC
ATTGCCACCC ATGCCACCGT GTGGGTAAAC GGCAATGTGG TAAAGCGTAA CTATTCGGGC
TACAACGCGA GTTATATCGA TATTACCCCT TATATTCGTT ATGGCGATGC CATGAATACC
ATTGCGGTTA AGGTAGATGC CACGCAAATG GAAGGCTGGT GGTACGAGGG GGCGGGTATG
TATCGCCACA CTTGGTTGGT TAAAGCCAAC CCCGTGCATA TTGTTACCGA CGGCCTACAC
GCCACGCCGC GTTTAGAAAG CGAAACCCTA GAGGGTGGTA AATGGAGCAT ACCGGTTGAG
GTAACCCTAA ATAACAGCGG CGAAAATCTG CAAACCGTAA CGGTAGAGGT AACGGTTACG
GCACCCAATG GCAAGCAAGT GGCCAAGCAA AGTGGCAATG TAACTGTGCC GGTGTTGGGC
GAGGCGGTGG CTAAGTTACC CGTGACTATT CAGTCGCCTG CGCTGTGGAG CCACGAGCAA
ACCAATCTAT ATCGCGTAAA CGCTGTCGTT AAGCACGGCA AGCGCGTCAT TGATGAAATA
GCACTTTCTA CCGGCTTTAG AACGGTGCGT TTTGATTCGC AGCAGGGCTT CTTTTTAAAC
GATAAGCACG TGAAACTGCA GGGTGTGTGT ATTCATCAAG ATCACGCTGG CGTAGGGGTG
GCCGTGCCCA CTAGTATTTG GCAATACCGC CTGCGCCGTT TAAAAGAGCT GGGTGTAAAC
GCTATTCGTT TTTCACATAA TGCCCCCGCC GTCGAGGTGC TGGATTTGGT GGATTCCATG
GGCTTTTTGG TGATGGACGA AAACCGCAAC TTCAACCCAT CGCCCGATTA CATGCAGCAG
CTAGAATGGA TGGTTCGTCG CGATCGCCAT CACCCGGGCA TTATTTTGTG GTCGGTATTT
AACGAAGAGC CGGTACAGGC GTCGGAGGTA GGTTATCAAA TGGTGCGCCG CATGGTGGCC
GCCGTTAAAG CATTAGACGA TACACGCCCC GTAACCGCAG CTATGAACGG CGGTTTTTTT
AGCGACTTGA ATGTATCCCA CGCGGTGGAT GTACTGGGGG CAAACTACCA AGTGCCCGAT
TACGATCGCT TTCACGCGGC GCGTCCAGAA ATGCCCTTTA CCAGCTCGGA AGATACTTCT
GCGTTTATGA TGCGCGGCGA ATTCACCACC GATTACGATA AAAACCTTAT TGCCAGCTAC
GATGAAGACT TTGCCTTTTG GGGCAATAGT CACCGCGATG CTTGGCAGGC GGTAGCAACG
CGCGACTATG TAGCGGGTGC ATTTGTATGG ACAGGGTTTG ATTACCGCGG CGAACCCACG
CCACTGGCTT GGCCTTCGGT AAGCTCGTTT TTTGGCATTA TGGATTTAAA CGGCTTTGCC
AAAACCGCGT ATTACATTCA CCGCGCGCAA TGGGTGAAGG ATGAGCCGCA AGCGTATTTA
GCGCCCCATT GGAACTGGGC GGGTAAAGAA GGGCAGATTA TTCCCGTATT GGTGATGGCC
AATGTCGACA AAGTGCAATT GCTGCTTAAT GGCAAAAGCT TAGGCGAGCA AGTGGTTGAC
CCTTTTCAAA TGAACACCTT CGATGTGGCT TATCAGCCCG GCAAACTTGA AGTAATTGGC
TATAGCAGCG GTAAAGAGGT GGTGCGCAAT AGTGTAGAAA CCACCGGCAA AGCTGTGGCT
GTGCAGTTGG TGCCAGATCG CAAAGCGCTA GTGGGCGACG GTTTTGATGC TATGCCAATT
ACCGTGCAGG CGGTGGATGC AAAAGGGCGG GTTGTACCTA CCGATAACTC GCTTATCCAC
TTTGAAATAA GCGGTGCAGG GCAGTCGATT GGTCACGGCA ATGGCAACCC CAATTCCCAC
GAGGATGAGA AAGGCGCAAC GCGCCATTTA TTTAATGGGC TCGCCCAATT AATTGTGCAA
AGTCATTACG AGAGCAGCGG CAATATCACA GTAAAAGCCA GCTCGCCGGG GTTAAAAACC
GCAAAGGTAA GCATACCGGT TAAAAAAGTG GCGGCGGTGC CCTACGTGGC CTCGCAAACG
GCCCCCAATG TGCATTTGTC CGATTGGCGT ACGTCTCCCG TGGCGAGCCA GCGCCCTGAT
CCAACCCAAA AAGTGGCCGA TAACGATATG AATAGCTGGG GGTGGGGGCA GCCGCCGTTT
ATGTCGCAAG CCAAGGGCGA AACGGCACCC GCGCGCTACC GCTTGTATCG CACTAACTTT
ACCCCGCGCA AAAATTTAGC GCGCGGTGAT GGCGAGTTAT TTATAGGCGA TGTAGTCGGC
CGCGTGGAAG TATGGCTAAA CGACGAGCTG CTGTACAAAA AAGACAACGT GCGCAAACAA
AACCTACGAC TGCCCATCCC CAAAGGAGAA GGCAACCGCG AACTTACGTT TTTGCTAGAA
GATGAAGGCC AAGACAACGC CGTAATAGGC GGCCCAGTAA TTGTGCAGCC AAAGGGTAAG
AAGTAG
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| Protein sequence | MKISLYYHGR VVGRLVLLLA VLFGSSAAFA AEQEDGRERL SLNRGWYFHL GDVPMAPIKG
HSESYMNAKA GNAPGPAGRE FDDSEWRRLD LPHDWAVEGP FDPNENISQG YRPRGISWYR
RYLRVEESDR GRYFELQFDA IATHATVWVN GNVVKRNYSG YNASYIDITP YIRYGDAMNT
IAVKVDATQM EGWWYEGAGM YRHTWLVKAN PVHIVTDGLH ATPRLESETL EGGKWSIPVE
VTLNNSGENL QTVTVEVTVT APNGKQVAKQ SGNVTVPVLG EAVAKLPVTI QSPALWSHEQ
TNLYRVNAVV KHGKRVIDEI ALSTGFRTVR FDSQQGFFLN DKHVKLQGVC IHQDHAGVGV
AVPTSIWQYR LRRLKELGVN AIRFSHNAPA VEVLDLVDSM GFLVMDENRN FNPSPDYMQQ
LEWMVRRDRH HPGIILWSVF NEEPVQASEV GYQMVRRMVA AVKALDDTRP VTAAMNGGFF
SDLNVSHAVD VLGANYQVPD YDRFHAARPE MPFTSSEDTS AFMMRGEFTT DYDKNLIASY
DEDFAFWGNS HRDAWQAVAT RDYVAGAFVW TGFDYRGEPT PLAWPSVSSF FGIMDLNGFA
KTAYYIHRAQ WVKDEPQAYL APHWNWAGKE GQIIPVLVMA NVDKVQLLLN GKSLGEQVVD
PFQMNTFDVA YQPGKLEVIG YSSGKEVVRN SVETTGKAVA VQLVPDRKAL VGDGFDAMPI
TVQAVDAKGR VVPTDNSLIH FEISGAGQSI GHGNGNPNSH EDEKGATRHL FNGLAQLIVQ
SHYESSGNIT VKASSPGLKT AKVSIPVKKV AAVPYVASQT APNVHLSDWR TSPVASQRPD
PTQKVADNDM NSWGWGQPPF MSQAKGETAP ARYRLYRTNF TPRKNLARGD GELFIGDVVG
RVEVWLNDEL LYKKDNVRKQ NLRLPIPKGE GNRELTFLLE DEGQDNAVIG GPVIVQPKGK
K
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