| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3881 |
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| Symbol | |
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| ID | 3967106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4894705 |
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| End bp | 4896948 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637922978 |
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| Product | Pectate lyase-like |
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| Protein accession | YP_529348 |
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| Protein GI | 90023521 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000360789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.117799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTT CACAACTACT GATAAGTACC TGCTGCCTAA CCTTAGCTGC CTGCGGTGGC
GGCGGCAGTG GCAGCAACGA CAGCGGCAGC GCATCGACAA GCTCTTCTAG CTCCAGTTCG
AGCAGTTCTA GCTCCTCATC TAGCAGTAGC TCTAGTTCCA GCAGCAGTAG TTCGTCGAGT
AGCTCCTCTA GTAGTTCAAG CAGTAGCTCC AGTAGCAGCT CCAGCAGTTC TGGCGGCGCA
CAAGGTGCCA CTACCCTGTT AATTCAAGAA TTAGCCACTG GGTTTTGTTC TGCTGGCGAT
ACCGATTTGG TAGTGGAAGA CGAGCACCTT GGTTACACCG GTAGCGGCTT TACCAACACC
GATAACGACC TAGGCGCCGA TATAGCCTGG CAAGTAAGCG TTGCAGAACA AGGTTTTTAC
GATGTGACCT TTCGCTACGC CGCAAGCAGC ACCCGCGCGG GTAGCTTAAC GGCCAACGAC
ATAGGCGCGG CAGACTATAC GTTTACCTCT AGCGGCGGCT GGACAAGCTG GTTAGAAGAA
ACCCAAACTA TCGAATTACA GGCGGGCACG AACACATTGG TGCTTACCGC TACCGGCAAC
AGCGGCCTGC CAAATATCGA TTATATTGAA TTAGACGGCC CAGAGTTGGC TGAGGCAGTA
GCGTGTGAAA GCTCGGATTC TTCAAGTTCA TCATCTAGTT CGTCCAGTAG CTCTAGCTCT
TCATCGAGCA CATCTAGCTC ATCGTCTAGT TCTTCCAGCT CAACCAGTTC CAGCTCATCA
TCAAGTTCGT CGTCTAGCTC TTCCTCTAGT AGTACCAGCG GCGGCACTGT TTTTGTTCCA
CCTAACCAAG CCTGTTACAA CCTAGTAAAC GACCCCAGCA TTAACTGGCG CGAATCTACC
CTGCAAACCG ATCAAGAAAT TATTGAGTGT TTGGCTTCGT CGCTAGGTAA GCCAGTGGGC
TTTGGCGAGA ATACCACTGG CGGCTACAAC CCAGCAGGGG GCAGTGAGCT GGTGATTATT
ACCGCCGATG GCGATGTATC TACCGAGCAG CAAGTGTTAA ATGCCATTAA TTCTGAAAAC
TATAAGTGGA TAGTGTTCGA CAAAGACGAC TTTGCCAGCA GAACCGAAGT GGCCATGTAC
CGGTTAGATT GCGCCAGTAG CAGTGTGCGC AACGCGCTTG GCGGCGCCAC TGAGGCAGAA
TGTAAAGACC ACAATGCCTG GTGCGAAGCT AACGGCGTTG CCAATGCCAG CTGTGAGCAA
ACATTTTTTA ACGAGCGCTT AAACGACTCT GGCCTGCCTA TTCGCAACAA AGTGATTAAA
TCGAATACCA CTATTGATGG CCGCGGCACT AACGCTTACT TCCTATTTAA TGGCTTTGCC
ATTGGCGCCG ACAGCAGCGG TACCAGCACT TATCAAGCGC AAAATGTAAT AGTGACAAAC
CTCGCGTTTG AAGGCGTAGG GCACACCGAA GATCACGACT TAGACCCAGA TATGATTCGG
TCAACGGGTG AATCCCACGA TATTTGGATT CATCAAAATA CATTCGAAAA CACCGGCGAC
TCGGCGTTCG ACATTAAAGT AGGTGCCTAC GATATTACCG TATCGTTTAA CCGCTTAATG
AATGTGAAGC GCGCAGCCCT GCACGGTTCG AGCGATAGCC GTACCATTAA CGCGCAAATT
ACGTCTACCA TTCACAACAA TTTATTTGTG ACTACCGACG ATCAATACGC GCTTAGCTCA
TACAATACAT TGCGCCGTGT GCCACTTATG CGCCGCGGTC AGTCGCATAT GTTTAACAAC
GTGTTTTACG GCTACCGCAA AGATATTCTT AGCGTGCGCG TGGGCGGCCG CATTGCCTTT
GAAGACAATA TGGTAATGAA CAGCACCACA GCCGCAGAAA CTAAAGACGA TGATATGAGC
TATTGGGTAG AAGGCTTGCT GCGCGACTTT AGAGAAGGCG GTTTAGAAAT AAGTGGCAGC
TATGTGTGGT TCTCGAATTC GGATTGCCAA CTACAGGGCG ACCCCGGTGA CCTAACCGCA
TCCCACGGCA GCACACCCGA TATGTACGCA ACCTACAACG CCGATTCCAA AGCCACAATA
GACGCAAACC GCTTTGCCGT AGGCCAAGAA CTGGCAGATT ACCTATTTGC CACCACCGGC
CGCGGCGGCG CAACGCCCTA TAACTCTGTG TACAGTGAAG GCAAAACGGC CATTATCGCG
GCCGCGCCAT CGACTTGTCA GTGA
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| Protein sequence | MKLSQLLIST CCLTLAACGG GGSGSNDSGS ASTSSSSSSS SSSSSSSSSS SSSSSSSSSS
SSSSSSSSSS SSSSSSSGGA QGATTLLIQE LATGFCSAGD TDLVVEDEHL GYTGSGFTNT
DNDLGADIAW QVSVAEQGFY DVTFRYAASS TRAGSLTAND IGAADYTFTS SGGWTSWLEE
TQTIELQAGT NTLVLTATGN SGLPNIDYIE LDGPELAEAV ACESSDSSSS SSSSSSSSSS
SSSTSSSSSS SSSSTSSSSS SSSSSSSSSS STSGGTVFVP PNQACYNLVN DPSINWREST
LQTDQEIIEC LASSLGKPVG FGENTTGGYN PAGGSELVII TADGDVSTEQ QVLNAINSEN
YKWIVFDKDD FASRTEVAMY RLDCASSSVR NALGGATEAE CKDHNAWCEA NGVANASCEQ
TFFNERLNDS GLPIRNKVIK SNTTIDGRGT NAYFLFNGFA IGADSSGTST YQAQNVIVTN
LAFEGVGHTE DHDLDPDMIR STGESHDIWI HQNTFENTGD SAFDIKVGAY DITVSFNRLM
NVKRAALHGS SDSRTINAQI TSTIHNNLFV TTDDQYALSS YNTLRRVPLM RRGQSHMFNN
VFYGYRKDIL SVRVGGRIAF EDNMVMNSTT AAETKDDDMS YWVEGLLRDF REGGLEISGS
YVWFSNSDCQ LQGDPGDLTA SHGSTPDMYA TYNADSKATI DANRFAVGQE LADYLFATTG
RGGATPYNSV YSEGKTAIIA AAPSTCQ
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